This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

Display Name: Hungary/LOC_000M51J.1/2023-09-06
A. Nagy, G. E. Toth, D. Cadar & K. Kerenyi

Submission details

Submission ID
PV596759.1
Date submitted
2025-07-01 21:34:19 UTC
Date released
2025-07-01 21:42:43 UTC

Data use terms

Data use terms
OPEN
Data use terms URL

Authors

Author affiliations
National Center for Public Health and Pharmacy, National Reference Laboratory for Viral Zoonoses

Alignment and QC metrics

Completeness
77.88%
Length
10597
Total ambiguous nucs
0
Total deleted nucs
12
Total frame shifts
0
Total inserted nucs
35
Total SNPs
1740
Total stop codons
0
Total unknown nucs
1985

Sample details

Earliest release date
2025-05-13
Collection subdivision level 1
Nagykanizsa
Collection country
Hungary
Collection date
2023-09-06
Collection date (lower bound)
2023-09-06
Collection date (upper bound)
2023-09-06
Isolate name
4485

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2025-05-13
NCBI update date
2025-05-13

Lineage

Lineage
2

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C123T
  • G126A
  • G128A
  • A156T
  • T167G
  • G168A
  • T180A
  • T199C
  • C204T
  • C210T
  • C216G
  • G219A
  • G222C
  • A231T
  • T234C
  • C246T
  • C255T
  • G261A
  • Deletions
    10467-10470, 10487-10494
    Insertions
    ins_10408:TGTATTGAGT, ins_6614:CGN, ins_10461:AG, ins_10501:T, ins_10452:AGA, ins_10483:GAT, ins_10417:GTTGTAGTGTTTA

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:S9G
  • NS1:Y34F
  • NS1:Y35H
  • NS1:K44R
  • NS1:K51A
  • NS1:V71I
  • NS1:E94N
  • NS1:S99A
  • NS1:T105A
  • NS1:I113M
  • NS1:L123I
  • NS1:V135I
  • NS1:K141E
  • NS1:Q146A
  • NS1:L153M
  • NS1:K170R
  • NS1:V171I
  • NS1:S174T
  • NS2A

  • NS2A:M34I
  • NS2A:L38M
  • NS2A:I39L
  • NS2A:S68A
  • NS2A:M90L
  • NS2A:N104S
  • NS2A:V112A
  • NS2A:H119Y
  • NS2A:R122K
  • NS2A:Q123N
  • NS2A:I124V
  • NS2A:L126S
  • NS2A:I129V
  • NS2A:A137S
  • NS2A:T147S
  • NS2A:T150N
  • NS2A:R167K
  • NS2A:I183V
  • NS2B

  • NS2B:A41V
  • NS2B:S61T
  • NS2B:M88I
  • NS2B:V103A
  • NS2B:V119I
  • NS2B:V120I
  • NS3

  • NS3:K11R
  • NS3:F130Y
  • NS3:D172E
  • NS3:I175A
  • NS3:R215K
  • NS3:A233S
  • NS3:N253S
  • NS3:I257V
  • NS3:V283I
  • NS3:S347T
  • NS3:T356V
  • NS3:V384I
  • NS3:I506V
  • NS3:F509L
  • NS3:L537F
  • NS3:I597A
  • NS3:A610S
  • NS4A

  • NS4A:I6V
  • NS4A:K11R
  • NS4B

  • NS4B:T116A
  • NS4B:K193R
  • NS4B:I202T
  • NS5

  • NS5:K45R
  • NS5:V49I
  • NS5:I78V
  • NS5:R101K
  • NS5:E298A
  • NS5:D312E
  • NS5:E390D
  • NS5:R392K
  • NS5:R403G
  • NS5:R422K
  • NS5:S423N
  • NS5:H450N
  • NS5:K503T
  • NS5:R522K
  • NS5:R527K
  • NS5:R546K
  • NS5:A569S
  • NS5:R590K
  • capsid

  • capsid:S11N
  • capsid:V24G
  • capsid:S100T
  • capsid:K108T
  • capsid:T109A
  • capsid:I111F
  • capsid:A112T
  • capsid:V113I
  • capsid:M114L
  • capsid:I115L
  • capsid:S120C
  • capsid:V121A
  • env

  • env:T64S
  • env:K71R
  • env:D83E
  • env:R93K
  • env:S122T
  • env:I126T
  • env:R128W
  • env:T129I
  • env:L131Q
  • env:V159T
  • env:L167F
  • env:A172S
  • env:N199S
  • env:T205S
  • env:T208A
  • env:T210S
  • env:V232T
  • env:I253V
  • prM

  • prM:M44L
  • prM:D46E
  • prM:S57A
  • prM:A73S
  • prM:M112L
  • prM:V156A
  • prM:V157I
  • Deletions
    None
    Insertions
    ins_NS4A:126:X

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