This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M3CY.1

Display Name: LOC_000M3CY.1
C. Deng, B. Zhang, Y. Zhang, N. Li, Q. Zhang, H. Ye, L. Gao, S. Zhan & S. Yuan

Sample details

Collection date (upper bound)
2025-09-26
Earliest release date
2025-09-26

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-21 15:32insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-09-26
NCBI update date
2025-09-26
INSDC accession

Alignment and QC metrics

Length
10642
Total SNPs
70
Total inserted nucs
0
Total deleted nucs
387
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
100.00%
Total stop codons
0

Submission details

Submission ID
PI205086.1
Submitting group
Date submitted
2026-01-21 15:32:32 UTC
Date released
2026-01-21 15:51:09 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C1465T
  • C1974T
  • C2321T
  • G2562A
  • T3840C
  • C4107T
  • G4195A
  • A4257G
  • G5280A
  • C5865T
  • T6405C
  • C7015T
  • G7797A
  • T7826C
  • T8235C
  • C8859A
  • A8862G
    • Deletions
    10442-10477, 10493-10497, 10506-10582, 10589-10615, 10620-10655, 10659-10736, 10753-10796, 10808-10830, 10834-10871, 10882-10904
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:A224T

    • NS5

  • NS5:V49A

    • env

  • env:L167F
  • env:S452L
    • Deletions
    None
    Insertions
    None

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