This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M3A2.1

Display Name: USA/LOC_000M3A2.1/2022-08-22
J. Hyeon, Z. H. Helal, N. F. Soriano, D. H. Chung, A. Hunt & G. Risatti

Submission details

Submission ID
PV126606.1
Submitting group
Date submitted
2025-06-18 22:39:52 UTC
Date released
2025-06-18 22:47:52 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-06-18 22:39insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The University of Connecticut, Dept. of Pathobiology & Veterinary Science

Alignment and QC metrics

Completeness
97.62%
Length
10401
Total ambiguous nucs
0
Total deleted nucs
368
Total frame shifts
0
Total inserted nucs
3
Total SNPs
142
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2025-06-04
Collection subdivision level 1
Connecticut
Collection country
USA
Collection date
2022-08-22
Collection date (lower bound)
2022-08-22
Collection date (upper bound)
2022-08-22
Isolate name
22_3410

Host

Host name scientific
Buteo jamaicensis
Host taxon id

INSDC

INSDC accession
NCBI release date
2025-06-04
NCBI update date
2025-06-04

Lineage

Lineage
1A

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C315T
  • T348C
  • C519T
  • A580T
  • T609C
  • A630G
  • C783T
  • C807T
  • C990T
  • G1365A
  • A1401G
  • T1442C
  • C1465T
  • A1674G
  • A1785G
  • T1872C
  • T1923C
  • T1965C
    • Deletions
    10398-10405, 10414-10418, 10426-10434, 10439-10498, 10505-10513, 10521-10532, 10545-10576, 10589-10595, 10602-10629, 10649-10668, 10681-10858
    Insertions
    ins_10421:G, ins_10644:TG

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:T52I
  • NS2A:L95F

    • NS3

  • NS3:S334T

    • NS4A

  • NS4A:V89A

    • NS4B

  • NS4B:S14I

    • NS5

  • NS5:K21R
  • NS5:V258A
  • NS5:I402M

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:M39L
    • Deletions
    None
    Insertions
    None

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