This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M26B.1

Display Name: USA/LOC_000M26B.1/2014-08-22
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

Sample details

Collection date
2014-08-22
Collection date (lower bound)
2014-08-22
Collection date (upper bound)
2014-08-22
Earliest release date
2025-09-04
Collection country
USA
Collection subdivision level 1
Nebraska; Douglas
Isolate name
UNMC0209

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-16 19:40insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Nebraska Medical Center, Omaha, Nebraska

INSDC

NCBI release date
2025-09-04
NCBI update date
2025-09-10
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex tarsalis

Alignment and QC metrics

Length
10280
Total SNPs
61
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.21%
Total stop codons
0

Submission details

Submission ID
OZ310194.1
Submitting group
Date submitted
2025-09-16 19:40:03 UTC
Date released
2025-09-16 19:56:08 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G520A
  • A630G
  • C660T
  • C849T
  • G905A
  • T1083C
  • C1353T
  • T1442C
  • T1443C
  • C1465T
  • T1881C
  • C1900A
  • C1926T
  • C2223T
  • C2227T
  • G2373A
  • T2421C
  • T2439C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS3

  • NS3:A177V

    • NS4B

  • NS4B:I240M

    • env

  • env:V159A
  • env:L167F
  • env:L312I

    • prM

  • prM:V19I
  • prM:S147N
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue