This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M26B.1

USA/UNMC0209/2014-08-22
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

University of Nebraska Medical Center, Omaha, Nebraska

Sample details

Collection date
2014-08-22
Earliest release date
2025-09-04
Sampling location
USA (Nebraska; Douglas)
Isolate name
UNMC0209

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-04 16:50insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-09-04
NCBI update date
2025-10-21
INSDC accession
BioProject accession
BioSample accession

Host

Host

Submission details

Submission ID
OZ310194.1
Submitting group
Date submitted
2026-06-04 16:50:25 UTC
Date released
2026-06-04 17:13:09 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
61
Length
10280 (93.2%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:A177V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:I240M
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • env:L312I
  • prM:V19I
  • prM:S147N
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G520A
  • A630G
  • C660T
  • C849T
  • G905A
  • T1083C
  • C1353T
  • T1442C
  • T1443C
  • C1465T
  • T1881C
  • C1900A
  • C1926T
  • C2223T
  • C2227T
  • G2373A
  • T2421C
  • T2439C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS3

  • NS3:A177V

NS4B

  • NS4B:I240M

env

  • env:V159A
  • env:L167F
  • env:L312I

prM

  • prM:V19I
  • prM:S147N
Deletions
N/A
Insertions
N/A

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