This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M26B.1

USA/LOC_000M26B.1/2003-01-01
P. M. Armstrong, C. R. Vossbrinck, T. G. Andreadis, J. F. Anderson, K. N. Pesko, R. M. Newman, N. J. Lennon, B. W. Birren, G. D. Ebel, M. R. Henn, J. Levin, C. Malboeuf, M. Casali, C. Russ, N. Lennon, R. Erlich, S. Anderson, K. Rizzolo, L. Green, E. Ryan, Q. Yu, S. Young, A. Berlin, D. Heiman, ..., B. Birren

Broad Institute of MIT and Harvard

Sample details

Collection date
2003
Earliest release date
2010-07-28
Sampling location
USA (Connecticut)
Isolate name
WNV-1/US/BID-V4612/2003

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2010-07-28
NCBI update date
2011-08-08
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
HM488230.1
Submitting group
Date submitted
2026-11-04 12:14:56 UTC
Date released
2026-11-04 12:26:04 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
114
Total inserted nucs
69
Total deleted nucs
108
Length
10985 (100%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:I113V
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:S38L
  • NS5:K177R
  • NS5:S844L
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • A630G
  • C660T
  • T1167C
  • T1442C
  • C1465T
  • C2466T
  • G2478A
  • A2806G
  • T3993C
  • C4107T
  • A4146G
  • C4803T
  • G5280A
  • T5466C
  • A6090G
  • C6138T
  • C6238T
  • C6360T
Deletions
10649, 10653, 10654, 10676-10699, 10714-10722, 10744-10756, 10786-10794, 10825-10831, 10849-10851, 10861, 10862, 10917-10919, 10926-10935, 10942-10947, 10958-10964, 10971, 10972, 10977-10981, 11003, 11004, 11012-11014
Insertions
ins_10661:GCGAAGTGAT, ins_10732:CACAT, ins_10764:TGAT, ins_10768:GTA, ins_10802:GGACC, ins_10836:ATC, ins_10853:CA, ins_10876:GGACCC, ins_10881:TGTGGACTG, ins_10900:AT, ins_10952:GACCCCAC, ins_10994:TGTAAGCCCTC, ins_11020:C

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:I113V

NS5

  • NS5:S38L
  • NS5:S844L

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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