This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M1ND.1

USA/LOC_000M1ND.1/2014-08-01
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

University of Nebraska Medical Center, Omaha, Nebraska

Sample details

Collection date
2014-08-01
Earliest release date
2025-09-04
Sampling location
USA (Nebraska; Lancaster)
Isolate name
UNMC0185

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-16 22:14insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-09-04
NCBI update date
2025-10-21
INSDC accession
Bioproject accession
Biosample accession

Host

Host

Submission details

Submission ID
OZ310191.1
Submitting group
Date submitted
2026-02-16 22:13:50 UTC
Date released
2026-02-16 22:46:36 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
71
Length
10260 (93%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • A630G
  • A1218G
  • T1442C
  • C1465T
  • C1470T
  • C1569T
  • G1662A
  • T1729C
  • C1750T
  • C1959T
  • C2109T
  • C2271T
  • C2304T
  • C2466T
  • T2475C
  • T2772A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:V58I
  • NS2A:R188K

    • NS4B

  • NS4B:I240M

    • NS5

  • NS5:E439V

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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