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LOC_000M1ND.1
Download
Download FASTA
Download metadata TSV
Sweden/LOC_000M1ND.1/2016-09-05
R. Dyrdak,
M. Mastafa,
L. Thebo,
E. Eriksson,
A. Bjerkner,
R. Neher &
J. Albert
Karolinska University Hospital, Department of Clinical Microbiology
Sample details
Collection date
2016-09-05
Earliest release date
2018-09-24
Sampling location
Sweden
Isolate name
EVD68_SWE_051_160905
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-05-08 22:39
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2018-09-24
NCBI update date
2018-09-24
INSDC accession
MH674132.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
MH674132.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-08 22:39:25 UTC
Date released
2026-05-08 23:01:42 UTC
Clade
Clade EV-D68
B3
Genotype
Genotype
EV-D68
Alignment and QC
Total SNPs
696
Total deleted nucs
35
Total unknown nucs
1528
Length
7158 (76.9%)
Nucleotide mutations
Mutations called relative to the
AY426531.1
reference
Substitutions
C
95
T
C
101
T
C
106
T
T
116
C
C
122
T
A
126
G
A
140
G
T
158
C
A
166
G
T
172
C
G
197
A
C
203
T
T
222
C
A
232
T
T
262
C
G
263
A
C
268
T
G
272
T
Show more
Deletions
688-722
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
AY426531.1
reference
Substitutions
2A
2A:
I
22
T
2A:
V
37
I
2A:
R
65
K
2A:
A
99
V
3C
3C:
I
46
T
3C:
N
50
D
3C:
C
93
Y
3D
3D:
N
6
S
3D:
M
11
V
3D:
S
41
P
3D:
N
95
S
3D:
E
101
D
3D:
Q
130
H
3D:
V
277
I
3D:
I
278
V
3D:
K
307
R
3D:
I
360
V
VP1
VP1:
S
1
I
VP1:
N
2
D
VP1:
V
13
I
VP1:
G
76
S
VP1:
K
84
R
VP1:
N
90
D
VP1:
A
92
T
VP1:
S
95
A
VP1:
G
97
Q
VP1:
T
98
A
VP1:
H
99
D
VP1:
K
110
R
VP1:
N
142
S
VP1:
N
143
S
VP1:
D
144
N
VP1:
S
145
N
VP1:
M
148
V
VP1:
K
168
E
Show more
VP2
VP2:
S
59
A
VP2:
S
73
A
VP2:
N
74
T
VP2:
Y
98
H
VP2:
D
136
N
VP2:
N
144
D
VP2:
R
151
A
VP2:
I
167
L
VP2:
V
195
A
VP2:
V
211
I
VP2:
V
225
M
VP3
VP3:
I
40
V
VP3:
M
46
V
VP3:
I
47
V
VP3:
D
59
E
VP3:
G
60
S
VP3:
N
62
V
VP3:
R
68
K
VP3:
V
73
A
VP3:
Q
74
L
VP3:
A
75
T
VP3:
L
77
V
VP3:
S
180
N
VP4
VP4:
I
18
V
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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