This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M1ND.1

USA/LOC_000M1ND.1/2010-07-26
N. Grubaugh, Y. Fang, N. L. Matteson, K. Gangavarapu, L. Coffey, C. Barker & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2010-07-26
Earliest release date
2019-01-20
Sampling location
USA (Bakersfield,California)
Isolate name
WNV/bird/Bakersfield_CA_USA/2010-07-26/W319

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-09 12:53insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
Bioproject accession

Host

Host

Submission details

Submission ID
MH507872.1
Submitting group
Date submitted
2026-03-09 12:53:36 UTC
Date released
2026-03-09 13:06:01 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
61
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • 2K:S19G
  • NS2B:A103V
  • NS3:I162M
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:I245T
  • NS4B:E249G
  • NS5:K177R
  • NS5:N281D
  • NS5:T641R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T477C
  • A630G
  • C660T
  • T1442C
  • C1465T
  • G1962A
  • C2371T
  • C2466T
  • C2889T
  • C3570T
  • C4107T
  • C4129T
  • A4146G
  • C4272T
  • T4353C
  • T4542C
  • C4803T
  • C4827T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:S19G

NS3

  • NS3:I162M

NS4B

  • NS4B:I245T
  • NS4B:E249G

NS5

  • NS5:N281D
  • NS5:T641R

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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