This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M1ND.1

Display Name: USA/LOC_000M1ND.1/2017-10-05
N. Grubaugh, S. Grewal, N. L. Matteson, K. Gangavarapu, N. Gurfield & K. Andersen

Sample details

Collection date
2017-10-05
Collection date (lower bound)
2017-10-05
Collection date (upper bound)
2017-10-05
Earliest release date
2019-01-20
Collection country
USA
Collection subdivision level 1
Descanso,California
Isolate name
WNV/bird/Descanso_CA_USA/2017-10-05/W095

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-05 16:17insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Corvus brachyrhynchos

Alignment and QC metrics

Length
10302
Total SNPs
100
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.41%
Total stop codons
0

Submission details

Submission ID
MH507686.1
Submitting group
Date submitted
2026-01-05 16:17:14 UTC
Date released
2026-01-05 16:29:13 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A125G
  • A421G
  • T477C
  • A630G
  • C660T
  • C732T
  • C816T
  • T1442C
  • G1455A
  • C1465T
  • A1566G
  • C1569T
  • T2250C
  • C2454T
  • C2466T
  • T2910C
  • T2952A
  • T3160C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:S19G

    • NS2B

  • NS2B:T34S

    • NS3

  • NS3:I162M
  • NS3:S467L

    • NS4B

  • NS4B:C120F

    • NS5

  • NS5:K76R

    • capsid

  • capsid:K10R
  • capsid:T109A

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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