This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M1FU.1

Display Name: Kosovo/LOC_000M1FU.1/2022
Hoxha, I.; Xhekaj, B.; Sherifi, K.; Kniha, E.

Submission details

Submission ID
PQ855756.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-03 23:20:52 UTC
Date released
2025-04-03 23:29:36 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-04-03 23:20insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Institute of Specific Prophylaxis and Tropical Medicine, Center for Pathophysiology, Infectiology and Immunology, Medical University of Vienna

Alignment and QC metrics

Completeness
6.89%
Length
693
Total ambiguous nucs
0
Total deleted nucs
99
Total frame shifts
0
Total inserted nucs
32
Total SNPs
109
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2025-02-26
Collection subdivision level 1
Prishtina
Collection country
Kosovo
Collection date
2022
Collection date (lower bound)
2022-01-01
Collection date (upper bound)
2022-12-31
Isolate name
KOS_Cx_pip_2022

Host

Host name scientific
Culex pipiens
Host taxon id
7175

INSDC

INSDC accession
PQ855756.1
NCBI release date
2025-02-26
NCBI update date
2025-02-26

Lineage

Lineage
2

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T10041A
  • C10138A
  • T10140A
  • T10143G
  • A10149T
  • A10161G
  • C10179A
  • G10185T
  • A10190G
  • A10191G
  • C10200T
  • C10203T
  • T10209C
  • A10212T
  • A10218G
  • C10219A
  • G10224A
  • C10230T
    • Deletions
    10045-10131, 10467-10470, 10487-10494
    Insertions
    ins_10416:TGTTT, ins_10461:AG, ins_10501:T, ins_10483:GAT, ins_10452:AGA, ins_10400:GATAAAGCTGT, ins_10407:AGTTGTA

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS5

  • NS5:E816A
  • NS5:K837R
  • NS5:A860T
  • NS5:Q869H
  • NS5:A877S
  • NS5:I878V
  • NS5:D881E
  • NS5:K892R
  • NS5:T898I
  • NS5:L899V
    • Deletions
    None
    Insertions
    None

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