This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M1A4.1

Display Name: USA/LOC_000M1A4.1/2018
T. F. F. Ng, S.-W. W. Chern, C. J. Castro & W. A. Nix

Sample details

Collection date
2018
Collection date (lower bound)
2018-01-01
Collection date (upper bound)
2018-12-31
Earliest release date
2020-04-20
Collection country
USA

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-28 10:45insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centers for Disease Control and Prevention, Polio and Picornavirus Laboratory Branch

INSDC

NCBI release date
2020-04-20
INSDC accession EV-A71

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics EV-A71

Length EV-A71
7408
Total SNPs EV-A71
1406
Total inserted nucs EV-A71
9
Total deleted nucs EV-A71
9
Total ambiguous nucs EV-A71
0
Total unknown nucs EV-A71
0
Total frame shifts EV-A71
0
Completeness EV-A71
100.00%

Submission details

Submission ID
MT081374.1.EV-A71
Submitting group
Date submitted
2025-10-28 10:45:17 UTC
Date released
2025-10-28 11:22:37 UTC

Clade

Clade EV-A71
C1-like

Genotype

Genotype
EV-A71

Files

Annotations

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • T11C
  • G12T
  • T13G
  • G14T
  • T17G
  • G19T
  • T20G
  • C21T
  • T36C
  • T41C
  • T51C
  • A54T
  • G58A
  • A60T
  • T61C
  • T63A
  • T67A
  • C69T
    • Deletions
    7332-7340
    Insertions
    ins_128:CT, ins_7324:GAGGCCA

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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