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LOC_000M1A4.1
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Download FASTA
Download metadata TSV
USA/LOC_000M1A4.1/2009-06-15
N. Grubaugh,
Y. Fang,
N. L. Matteson,
K. Gangavarapu,
L. Coffey,
C. Barker &
K. Andersen
The Scripps Research Institute, Department of Immunology and Microbiology
Sample details
Collection date
2009-06-15
Earliest release date
2019-01-20
Sampling location
USA (Bakersfield,California)
Isolate name
WNV/bird/Bakersfield_CA_USA/2009-06-15/W307
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-09 12:53
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
MH507860.1
Bioproject accession
PRJNA472981
Host
Host
Aphelocoma californica
Submission details
Submission ID
MH507860.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-09 12:53:36 UTC
Date released
2026-03-09 13:06:01 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000M1A4.1.embl
Alignment and QC
Total SNPs
65
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
2K:
L
15
M
NS1:
N
131
S
NS1:
I
194
V
NS1:
I
243
V
NS2A:
R
122
H
NS2B:
A
103
V
NS3:
T
249
P
NS3:
I
356
T
NS4A:
V
85
T
NS4B:
K
8
R
NS4B:
I
245
V
NS5:
K
177
R
NS5:
N
273
S
NS5:
K
314
R
capsid:
S
2
F
env:
K
93
R
env:
T
126
I
env:
I
159
A
Variant
False
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
C
101
T
C
340
T
T
585
C
A
630
G
C
660
T
T
1206
C
A
1320
G
T
1442
C
C
1465
T
C
1632
T
C
1974
T
A
2217
G
A
2313
G
G
2361
A
C
2466
T
G
2661
A
C
2820
T
A
2861
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
NS1
NS1:
N
131
S
NS1:
I
194
V
NS1:
I
243
V
NS2A
NS2A:
R
122
H
NS4A
NS4A:
A
85
T
NS4B
NS4B:
K
8
R
NS4B:
I
245
V
NS5
NS5:
N
273
S
NS5:
K
314
R
capsid
capsid:
S
2
F
env
env:
V
159
A
env:
L
167
F
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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