This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M1A4.1

Display Name: USA/LOC_000M1A4.1/2012-08-30
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

Sample details

Collection date
2012-08-30
Collection date (lower bound)
2012-08-30
Collection date (upper bound)
2012-08-30
Earliest release date
2025-09-03
Collection country
USA
Collection subdivision level 1
Nebraska; Dawes
Isolate name
UNMC0100

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 15:27insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Nebraska Medical Center, Omaha, Nebraska

INSDC

NCBI release date
2025-09-03
NCBI update date
2025-09-04
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex tarsalis

Alignment and QC metrics

Length
10260
Total SNPs
72
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.03%
Total stop codons
0

Submission details

Submission ID
OZ310164.1
Submitting group
Date submitted
2025-09-17 15:27:01 UTC
Date released
2025-09-17 15:43:38 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • A630G
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • C2109T
  • C2304T
  • C2466T
  • T2475C
  • C3501T
  • T3528C
  • G3697A
  • C3699T
  • C3912T
  • C3969T
  • G4088A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:V58I
  • NS2A:R188K

    • NS3

  • NS3:N253S
  • NS3:Y355H
  • NS3:R562K

    • NS4B

  • NS4B:I240M

    • NS5

  • NS5:K314R

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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