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LOC_000M1A4.1
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Download FASTA
Download metadata TSV
USA/LOC_000M1A4.1/2023-08-22
S. Jr. Freed,
S. Chandler,
S. Uhm,
D. Gurung,
A. Butz,
K. Herzog &
J. R. Fauver
University of Nebraska Medical Center, Omaha, Nebraska
Sample details
Collection date
2023-08-22
Earliest release date
2025-09-04
Sampling location
USA (Nebraska; Box Butte)
Isolate name
UNMC0695
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-27 15:36
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-09-04
NCBI update date
2025-10-21
INSDC accession
OZ310192.1
Bioproject accession
PRJEB96341
Biosample accession
SAMEA119799542
Host
Host
Culex tarsalis
Submission details
Submission ID
OZ310192.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-27 15:36:10 UTC
Date released
2026-02-27 15:53:47 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000M1A4.1.embl
Alignment and QC
Total SNPs
113
Length
10260 (93%)
Amino Acid Mutations from founder clade
2K:
L
15
M
NS1:
G
233
S
NS2A:
K
31
R
NS2A:
L
38
M
NS2A:
R
188
K
NS2B:
A
103
V
NS3:
A
177
V
NS3:
T
249
P
NS3:
I
356
T
NS4A:
V
85
A
NS4B:
R
20
K
NS4B:
M
29
I
NS5:
K
177
R
NS5:
K
314
R
NS5:
D
635
N
NS5:
I
696
V
capsid:
T
90
A
env:
K
93
R
env:
T
126
I
env:
I
159
A
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
C
340
T
A
364
G
C
385
A
C
423
T
C
435
T
C
480
T
G
504
A
A
543
G
A
630
G
G
753
T
G
756
A
C
762
T
C
1329
T
T
1442
C
C
1465
T
C
1470
T
T
1656
C
G
1662
A
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Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
NS1
NS1:
G
233
S
NS2A
NS2A:
K
31
R
NS2A:
L
38
M
NS2A:
R
188
K
NS3
NS3:
A
177
V
NS4B
NS4B:
R
20
K
NS4B:
M
29
I
NS5
NS5:
K
314
R
NS5:
D
635
N
NS5:
I
696
V
capsid
capsid:
T
90
A
env
env:
V
159
A
env:
L
167
F
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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