This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M0JN.1

Brazil/LOC_000M0JN.1/2009
I. P. Jr. Sousa, F. M. Burlandy, E. V. Costa, F. N. Tavares & E. E. da Silva

Instituto Evandro Chagas, Virology

Sample details

Collection date
2009
Earliest release date
2019-01-30
Sampling location
Brazil
Isolate name
39541/BRA-AP/2009

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-12 21:09insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-01-30
NCBI update date
2019-01-30
INSDC accession

Host

Host

Submission details

Submission ID
MH598942.1
Submitting group
Date submitted
2026-06-12 21:09:01 UTC
Date released
2026-06-12 21:17:57 UTC

Clade

Clade CV-A16
A

Genotype

Genotype
CV-A16

Alignment and QC

Total SNPs
60
Length
223 (3.01%)

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • C2604G
  • C2607T
  • T2610A
  • T2613A
  • T2616C
  • A2619T
  • C2620A
  • A2621G
  • G2622T
  • T2625C
  • G2626A
  • G2628A
  • T2634C
  • A2637T
  • A2640G
  • C2643T
  • C2644A
  • T2653C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U05876.1 reference

Substitutions

VP1

  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:M119L
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue