This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M0JN.1

USA/LOC_000M0JN.1/2008-01-01
M. R. Henn, R. M. Newman, D. Young, A. Ciota, J. Levin, C. Malboeuf, M. Casali, C. Russ, N. Lennon, R. Erlich, S. Anderson, K. Rizzolo, L. Green, E. Ryan, Q. Yu, S. Young, A. Berlin, D. Heiman, S. Sykes, M. Koehrsen, D. Borenstein, R. Engels, E. Freedman, M. Gellesch, ..., B. Birren

Broad Institute of MIT and Harvard

Sample details

Collection date
2008
Earliest release date
2010-07-28
Sampling location
USA (New York)
Isolate name
WNV-1/US/BID-V4100/2008

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2010-07-28
NCBI update date
2010-07-28
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
HM488206.1
Submitting group
Date submitted
2026-07-29 08:57:18 UTC
Date released
2026-07-29 09:09:50 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
63
Length
10541 (95.6%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:L104F
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:N26S
  • NS5:K177R
  • capsid:G9D
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • G122A
  • T243G
  • C340T
  • C381T
  • C435T
  • A630G
  • C933T
  • T1368C
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • T2089C
  • C2304T
  • C2440T
  • C2466T
  • C2779T
  • C2853T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:L104F

NS4B

  • NS4B:N26S

capsid

  • capsid:G9D

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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