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LOC_000LXQF.1
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Download FASTA
Download metadata TSV
USA/UNMC0621/2020-08-28
S. Jr. Freed,
S. Chandler,
S. Uhm,
D. Gurung,
A. Butz,
K. Herzog &
J. R. Fauver
University of Nebraska Medical Center, Omaha, Nebraska
Sample details
Collection date
2020-08-28
Earliest release date
2025-09-03
Sampling location
USA (Nebraska; Scotts Bluff)
Isolate name
UNMC0621
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-10 17:57
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-09-03
NCBI update date
2025-10-21
INSDC accession
OZ310070.1
Bioproject accession
PRJEB96341
Biosample accession
SAMEA119799503
Host
Host
Culex pipiens
Submission details
Submission ID
OZ310070.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-10 17:57:25 UTC
Date released
2026-03-10 18:18:22 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000LXQF.1.embl
Alignment and QC
Total SNPs
107
Length
10281 (93.2%)
Amino Acid Mutations from founder clade
2K:
L
15
M
NS1:
I
236
V
NS1:
P
258
S
NS2A:
R
188
K
NS2B:
A
103
V
NS2B:
V
120
I
NS3:
T
249
P
NS3:
I
356
T
NS3:
R
562
K
NS4A:
V
85
A
NS4B:
I
240
M
NS5:
K
45
R
NS5:
V
49
I
NS5:
K
177
R
NS5:
Y
254
H
NS5:
T
336
A
capsid:
K
104
R
env:
K
93
R
env:
T
126
I
env:
I
159
A
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
C
292
T
C
340
T
A
407
G
C
435
T
A
630
G
T
891
C
C
969
T
C
1065
T
C
1089
T
C
1170
T
C
1188
T
C
1275
T
T
1442
C
C
1465
T
T
1554
A
G
1662
A
C
1707
T
C
1750
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
NS1
NS1:
I
236
V
NS1:
P
258
S
NS2A
NS2A:
R
188
K
NS2B
NS2B:
V
120
I
NS3
NS3:
R
562
K
NS4B
NS4B:
I
240
M
NS5
NS5:
K
45
R
NS5:
V
49
I
NS5:
Y
254
H
NS5:
T
336
A
capsid
capsid:
K
104
R
env
env:
V
159
A
env:
L
167
F
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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