This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LX5L.1

Display Name: Serbia/LOC_000LX5L.1/2020
Suka, M.; Cirkovic, V.; Siljic, M.; Jankovic, M.; Loncar, A.; Stamenkovic, G.; Stanojevic, M.

Submission details

Submission ID
PP622964.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-14 08:21:33 UTC
Date released
2025-03-14 08:29:20 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-14 08:21insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
University of Belgrade, Faculty of Medicine, Institute of Microbiology and Immunology, Virology Department

Alignment and QC metrics

Completeness
7.54%
Length
832
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
175
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2024-04-17
Collection country
Serbia
Collection date
2020
Collection date (lower bound)
2020-01-01
Collection date (upper bound)
2020-12-31
Isolate name
SRWNV000934/Serbia/2020

Host

Host name scientific
Culex pipiens
Host taxon id
7175

INSDC

INSDC accession
PP622964.1
NCBI release date
2024-04-17
NCBI update date
2024-04-17

Lineage

Lineage
2

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T9204A
  • G9210A
  • G9216A
  • C9219A
  • C9222G
  • A9225G
  • A9228G
  • G9231T
  • T9234G
  • C9241T
  • C9244A
  • G9245A
  • T9246G
  • T9252C
  • C9255A
  • C9258A
  • C9259A
  • G9260A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS5

  • NS5:R522K
  • NS5:R527K
  • NS5:R546K
  • NS5:A569S
  • NS5:R590K
  • NS5:T641G
  • NS5:V740I
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue