This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LWB9.1

Display Name: Romania/LOC_000LWB9.1/2020
Dinu, S.; Stancu, I. G.; Cotar, A. I.; Ceianu, C. S.; Pintilie, G. V.; Karpathakis, I.; Falcuta, E.; Csutak, O.; Prioteasa, F. L.; Tiron, G. V.

Submission details

Submission ID
PP533510.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-21 17:47:49 UTC
Date released
2025-03-21 17:55:13 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-21 17:47insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
National Military Medical Institute for Research and Development, Molecular Epidemiology for Communicable Diseases Laboratory

Alignment and QC metrics

Completeness
4.58%
Frame shifts
NS5:643-905(nt:9605-10395)
Length
462
Total ambiguous nucs
0
Total deleted nucs
43
Total frame shifts
1
Total inserted nucs
0
Total SNPs
92
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2024-11-05
Collection country
Romania
Collection date
2020
Collection date (lower bound)
2020-01-01
Collection date (upper bound)
2020-12-31
Isolate name
RO_moM20-368/2020

Host

Host name scientific
Culex pipiens
Host taxon id
7175

INSDC

INSDC accession
PP533510.1
NCBI release date
2024-11-05
NCBI update date
2024-11-05

Lineage

Lineage
2

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G9609A
  • A9615C
  • C9618T
  • A9621G
  • G9627A
  • G9648C
  • A9651G
  • A9654G
  • A9655C
  • A9657T
  • C9663T
  • T9672C
  • T9678C
  • A9681T
  • T9690C
  • A9696G
  • G9699A
  • C9702T
    • Deletions
    9562-9604
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions
    Deletions
    NS5:628-642
    Insertions
    None

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