This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LU4R.1

Display Name: USA/LOC_000LU4R.1/2023-08-20
Davis, E. H.; Velez, J.; Hughes, H. R.

Submission details

Submission ID
PP445211.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-20 08:38:40 UTC
Date released
2024-12-20 08:46:54 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-20 08:39insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Centers for Disease Control and Prevention, Arboviral Diseases Branch

Alignment states and QC metrics

Completeness
99.76%
Length
11008
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
5
Total SNPs
106
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2024-10-13
Collection subdivision level 1
Nebraska
Collection country
USA
Collection date
2023-08-20
Collection date (lower bound)
2023-08-20
Collection date (upper bound)
2023-08-20
Isolate name
135322a-L1

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
PP445211.1
NCBI release date
2024-10-13
NCBI update date
2024-10-13

Lineage

Lineage
1A

Nucleotide mutations

Substitutions

  • C55T
  • C62T
  • A89G
  • A288G
  • C340T
  • C435T
  • A525T
  • A630G
  • T642C
  • C1308T
  • C1395T
  • T1442C
  • C1465T
  • C1473T
  • G1662A
  • C1750T
  • C2040T
  • C2109T
    • Deletions
    None
    Insertions
    ins_11029:AACAC

    Amino acid mutations

    Substitutions

    NS3

  • NS3:V115A
  • NS3:E182D

    • NS4B

  • NS4B:I240M

    • NS5

  • NS5:S277R
  • NS5:K432R

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None