This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LTTD.1

USA/CHC-11-1430/2011-07-05
J. E. Phillips, D. E. Stallknecht, T. A. Perkins, N. S. McClure, D. G. Mead, A. T. Perkins & D. Mead

University of Georgia, Southeastern Cooperative Wildlife Disease Study

Sample details

Collection date
2011-07-05
Earliest release date
2014-05-01
Sampling location
USA
Isolate name
CHC-11-1430

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2014-05-01
NCBI update date
2014-08-27
INSDC accession

Host

Host

Submission details

Submission ID
KC883793.1
Submitting group
Date submitted
2026-09-09 16:34:08 UTC
Date released
2026-09-09 16:47:17 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
10
Length
2004 (18.2%)
Amino Acid Mutations from founder clade
  • env:K93R
  • env:T126I
  • env:I159A
  • env:K406E
  • prM:A29S
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • T513A
  • G550T
  • T609C
  • A630G
  • C816T
  • T1442C
  • C1465T
  • C1629T
  • A2182G
  • C2466T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

env

  • env:V159A
  • env:L167F
  • env:K406E

prM

  • prM:A29S
Deletions
N/A
Insertions
N/A

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