This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LT3U.1

USA/LWN-09-844/2009-08-19
J. E. Phillips, D. E. Stallknecht, T. A. Perkins, N. S. McClure, D. G. Mead, A. T. Perkins & D. Mead

University of Georgia, Southeastern Cooperative Wildlife Disease Study

Sample details

Collection date
2009-08-19
Earliest release date
2014-05-01
Sampling location
USA
Isolate name
LWN-09-844

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2014-05-01
NCBI update date
2014-08-27
INSDC accession

Host

Host

Submission details

Submission ID
KC883769.1
Submitting group
Date submitted
2026-09-09 16:34:08 UTC
Date released
2026-09-09 16:47:17 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
18
Length
2004 (18.2%)
Amino Acid Mutations from founder clade
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:K71M
  • prM:V76F
  • prM:K83M
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • G492A
  • A630G
  • C660T
  • A677T
  • G691T
  • A713T
  • G756A
  • A820C
  • T1221A
  • T1368C
  • C1371T
  • T1442C
  • C1465T
  • T2029C
  • C2115T
  • T2226G
  • T2259C
  • C2466T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

env

  • env:V159A
  • env:L167F

prM

  • prM:K71M
  • prM:V76F
  • prM:K83M
Deletions
N/A
Insertions
N/A

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