This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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Loculus
West Nile Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Ebola Sudan
Test organism (without alignment)
West Nile Virus
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LOC_000LNJ2.1
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Display Name: USA/LOC_000LNJ2.1/2016-08-04
Feriancek,
N. M.; Breban,
M. I.; Bourgikos,
E.; Bransfield,
A.; Armstrong,
P. M.; Vogels,
C. B.; Grubaugh,
N. D.
Submission details
Submission ID
OZ201812.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-12 12:47:29 UTC
Date released
2024-12-12 12:54:28 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-12 12:47
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Yale School of Public Health, New Haven, CT
INSDC
Bioproject accession
PRJEB80643
Biosample accession
SAMEA116354239
INSDC accession
OZ201812.1
NCBI release date
2024-11-07
NCBI update date
2024-11-08
Alignment states and QC metrics
Completeness
98.96%
Length
11028
Total ambiguous nucs
3
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
0
Total SNPs
89
Total stop codons
0
Total unknown nucs
112
Sample details
Earliest release date
2024-11-07
Collection subdivision level 1
Connecticut
Collection country
USA
Collection date
2016-08-04
Collection date (lower bound)
2016-08-04
Collection date (upper bound)
2016-08-04
Isolate name
SM88G-8-4-Cxp-4
Host
Host name scientific
Culex pipiens
Host taxon id
7175
Lineage
Lineage
1A
Nucleotide mutations
Substitutions
C
340
T
C
435
T
C
456
T
C
474
T
T
585
C
A
630
G
T
928
C
C
1050
T
T
1442
C
C
1465
T
G
1662
A
T
1681
C
C
1750
T
C
2109
T
C
2304
T
C
2466
T
A
2640
G
T
2880
C
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Deletions
10897
Insertions
None
Amino acid mutations
Substitutions
NS2A
NS2A:
R
188
K
NS4B
NS4B:
I
240
M
NS5
NS5:
K
76
R
NS5:
S
844
T
env
env:
V
159
A
env:
L
167
F
prM
prM:
F
155
L
Deletions
None
Insertions
None
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