This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

Display Name: USA/LOC_000LMLZ.1/2018-07-23
Feriancek, N. M.; Breban, M. I.; Bourgikos, E.; Bransfield, A.; Armstrong, P. M.; Vogels, C. B.; Grubaugh, N. D.

Submission details

Submission ID
OZ201780.1
Date submitted
2024-12-02 15:57:48 UTC
Date released
2024-12-02 16:04:57 UTC

Data use terms

Data use terms
OPEN
Data use terms URL

Authors

Author affiliations
Yale School of Public Health, New Haven, CT

INSDC

Bioproject accession
Biosample accession
INSDC accession
NCBI release date
2024-11-07
NCBI update date
2024-11-08

Alignment states and QC metrics

Completeness
98.98%
Length
11029
Total ambiguous nucs
1
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
90
Total stop codons
0
Total unknown nucs
112

Sample details

Collection subdivision level 1
Connecticut
Collection country
USA
Collection date
2018-07-23
Collection date (lower bound)
2018-07-23
Collection date (upper bound)
2018-07-23
Isolate name
SM62B-7-23-Cxr

Host

Host name scientific
Culex restuans
Host taxon id

Lineage

Lineage
1A

Nucleotide mutations

Substitutions

  • C340T
  • T348C
  • C435T
  • A630G
  • A908G
  • T1442C
  • C1465T
  • C1473T
  • G1662A
  • C1750T
  • C2025T
  • C2109T
  • C2304T
  • C2466T
  • C2472T
  • C2955T
  • G3330A
  • C3501T
  • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NS2A

  • NS2A:R188K
  • NS3

  • NS3:Y355H
  • NS4B

  • NS4B:I240M
  • NS5

  • NS5:G805R
  • NS5:D881E
  • env

  • env:V159A
  • env:L167F
  • prM

  • prM:N148S
  • Deletions
    None
    Insertions
    None