This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LAVS.1

Display Name: Hungary/LOC_000LAVS.1/2024
Nagy, A.

Submission details

Submission ID
PQ381116.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-20 08:38:40 UTC
Date released
2024-12-20 08:46:24 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-20 08:39insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
National Center for Public Health and Pharmacy, National Reference Laboratory for Viral Zoonoses

Alignment states and QC metrics

Completeness
6.29%
Frame shifts
NS3:204-619(nt:5220-6468)
Length
426
Total ambiguous nucs
0
Total deleted nucs
268
Total frame shifts
1
Total inserted nucs
0
Total SNPs
81
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2024-10-23
Collection subdivision level 1
Esztergom
Collection country
Hungary
Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-10-23
Isolate name
8224_2024_WNV_HU

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
PQ381116.1
NCBI release date
2024-10-23
NCBI update date
2024-10-23

Lineage

Lineage
2

Nucleotide mutations

Substitutions

  • G5112A
  • T5223A
  • G5226T
  • A5229C
  • G5232A
  • A5241G
  • A5250C
  • G5255A
  • C5260T
  • A5265G
  • A5268G
  • C5271T
  • G5274A
  • A5277G
  • G5280A
  • A5283C
  • T5292C
  • G5295T
    • Deletions
    5113-5219, 5637-5797
    Insertions
    None

    Amino acid mutations

    Substitutions
    Deletions
    NS3:168-203
    Insertions
    None