This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L594.1

Display Name: Spain/LOC_000L594.1
Perez-Florido, J.

Submission details

Submission ID
OU953896.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-29 12:39:12 UTC
Date released
2024-12-29 12:46:57 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-29 12:39insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Clinical Bioinformatics Area, Hospital Virgen del Rocio, Avenida Manuel Siurot s/n, 41003

INSDC

Bioproject accession
PRJEB43037
Biosample accession
SAMEA8024178
INSDC accession
OU953896.1
NCBI release date
2021-11-05
NCBI update date
2021-11-05
SRA run accession
ERR5310325

Alignment states and QC metrics

Completeness
94.68%
Length
10885
Total ambiguous nucs
2
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
451
Total stop codons
0
Total unknown nucs
441

Sample details

Earliest release date
2021-11-05
Collection country
Spain
Collection date (upper bound)
2021-11-05
Isolate name
not_provided

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Lineage

Lineage
1A

Nucleotide mutations

Substitutions

  • T195A
  • G222A
  • T234C
  • G250A
  • C282T
  • A288G
  • G354A
  • C561T
  • C600T
  • T606C
  • A630G
  • T639C
  • T642C
  • C711T
  • G786A
  • T826C
  • T850C
  • C858T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NS1

  • NS1:A70S
  • NS1:K170R

    • NS2A

  • NS2A:G211R

    • NS2B

  • NS2B:V103A

    • NS3

  • NS3:P249T
  • NS3:T356I
  • NS3:T436A

    • NS4A

  • NS4A:A85V

    • NS4B

  • NS4B:E249D

    • NS5

  • NS5:K41R
  • NS5:R422K

    • capsid

  • capsid:A52T

    • env

  • env:I126T
  • env:V159I
  • env:L167F
    • Deletions
    None
    Insertions
    None