This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L3GS.1

Display Name: USA/LOC_000L3GS.1/2016-09-12
Grubaugh, N.; Matteson, N.; Gangavarupa, K.; Smith, R.; Andersen, K.

Submission details

Submission ID
OQ721845.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-29 12:39:12 UTC
Date released
2024-12-29 12:46:26 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-29 12:39insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

Bioproject accession
PRJNA472981
INSDC accession
OQ721845.1
NCBI release date
2023-08-02
NCBI update date
2023-08-02

Alignment states and QC metrics

Completeness
89.27%
Length
10302
Total ambiguous nucs
1
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
71
Total stop codons
0
Total unknown nucs
455

Sample details

Earliest release date
2023-08-02
Collection subdivision level 1
Story, Iowa
Collection country
USA
Collection date
2016-09-12
Collection date (lower bound)
2016-09-12
Collection date (upper bound)
2016-09-12

Host

Host name scientific
Culex restuans
Host taxon id
38742

Lineage

Lineage
1A

Nucleotide mutations

Substitutions

  • G177A
  • A630G
  • T850C
  • C1242T
  • A1341C
  • A1401G
  • T1442C
  • C1448T
  • C1465T
  • A2097C
  • C2371T
  • T2391C
  • C2466T
  • C3348T
  • C3504T
  • C3808T
  • C4057T
  • C4107T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NS2A

  • NS2A:L95F
  • NS2A:A224V

    • NS3

  • NS3:S334T

    • NS4B

  • NS4B:K8R
  • NS4B:I240M
  • NS4B:I245V

    • env

  • env:V159A
  • env:A161V
  • env:L167F
    • Deletions
    None
    Insertions
    None