This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L2DZ.1

Display Name: USA/LOC_000L2DZ.1/2013-08-19
Grubaugh, N.; Matteson, N.; Gangavarupa, K.; Ebel, G.; Murrieta, R.; Fauver, J.; Young, M.; Andersen, K.

Submission details

Submission ID
OQ721809.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-29 12:39:12 UTC
Date released
2024-12-29 12:46:26 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-29 12:39insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

Bioproject accession
PRJNA472981
INSDC accession
OQ721809.1
NCBI release date
2023-08-02
NCBI update date
2023-08-02

Alignment states and QC metrics

Completeness
72.18%
Length
10302
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
31
Total stop codons
0
Total unknown nucs
2341

Sample details

Earliest release date
2023-08-02
Collection subdivision level 1
Larimer, Colorado
Collection country
USA
Collection date
2013-08-19
Collection date (lower bound)
2013-08-19
Collection date (upper bound)
2013-08-19

Host

Host name scientific
Culex tarsalis
Host taxon id
7177

Lineage

Lineage
1A

Nucleotide mutations

Substitutions

  • A630G
  • T1442C
  • C1465T
  • C2304T
  • C2466T
  • C3912T
  • C3969T
  • C4107T
  • A4146G
  • C4272T
  • T4542C
  • C4803T
  • C4827T
  • G5280A
  • C6138T
  • T6165C
  • T6312C
  • T6384C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NS3

  • NS3:V601A

    • NS5

  • NS5:K182R

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None