This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L297.1

Display Name: USA/LOC_000L297.1/2005-07-24
Grubaugh, N.; Matteson, N.; Gangavarupa, K.; Neitzel, D.; Andersen, K.

Submission details

Submission ID
OQ721805.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-29 12:39:12 UTC
Date released
2024-12-29 12:46:26 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-29 12:39insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

Bioproject accession
PRJNA472981
INSDC accession
OQ721805.1
NCBI release date
2023-08-02
NCBI update date
2023-08-02

Alignment states and QC metrics

Completeness
93.41%
Length
10302
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
44
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2023-08-02
Collection subdivision level 1
Ramsey, Minnesota
Collection country
USA
Collection date
2005-07-24
Collection date (lower bound)
2005-07-24
Collection date (upper bound)
2005-07-24

Lineage

Lineage
1A

Nucleotide mutations

Substitutions

  • C315T
  • C450T
  • A630G
  • C660T
  • G1074A
  • C1329T
  • G1413A
  • T1442C
  • C1465T
  • C1704T
  • C1878T
  • C2328T
  • C2466T
  • C2592A
  • A3312G
  • G3768A
  • C3808T
  • C4107T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NS2A

  • NS2A:L95F

    • NS4A

  • NS4A:A85T

    • NS4B

  • NS4B:T241A

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None