This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L20R.1

Display Name: USA/LOC_000L20R.1/2002-08-07
Grubaugh, N.; Matteson, N.; Gangavarupa, K.; Neitzel, D.; Andersen, K.

Submission details

Submission ID
OQ721797.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-29 12:39:12 UTC
Date released
2024-12-29 12:46:26 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-29 12:39insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

Bioproject accession
PRJNA472981
INSDC accession
OQ721797.1
NCBI release date
2023-08-02
NCBI update date
2023-08-02

Alignment states and QC metrics

Completeness
89.37%
Length
10302
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
26
Total stop codons
0
Total unknown nucs
445

Sample details

Earliest release date
2023-08-02
Collection subdivision level 1
Brown, Minnesota
Collection country
USA
Collection date
2002-08-07
Collection date (lower bound)
2002-08-07
Collection date (upper bound)
2002-08-07

Host

Host name scientific
Corvus
Host taxon id
30420

Lineage

Lineage
1A

Nucleotide mutations

Substitutions

  • A630G
  • C660T
  • T1442C
  • C1465T
  • A1474G
  • C2466T
  • A3393T
  • A4071G
  • C4107T
  • A4146G
  • T4542C
  • C4803T
  • G5280A
  • G5628A
  • G5700A
  • A6135G
  • C6138T
  • C6238T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    env

  • env:V159A
  • env:L167F
  • env:T170A
    • Deletions
    None
    Insertions
    None