This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KPEC.1

Display Name: USA/LOC_000KPEC.1/2013-08-19
N. Grubaugh, N. Matteson, K. Gangavarupa, G. Ebel, R. Murrieta, J. Fauver, M. Young & K. Andersen

Sample details

Collection date
2013-08-19
Collection date (lower bound)
2013-08-19
Collection date (upper bound)
2013-08-19
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
Larimer, Colorado

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-12 15:10insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culex tarsalis

Alignment and QC metrics

Length
10302
Total SNPs
32
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
2926
Total frame shifts
0
Completeness
66.88%
Total stop codons
0

Submission details

Submission ID
OQ721354.1
Submitting group
Date submitted
2025-09-12 15:10:02 UTC
Date released
2025-09-12 15:23:37 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C269G
  • A630G
  • T1442C
  • C1465T
  • C1900T
  • C2304T
  • C2466T
  • C3912T
  • C3969T
  • C4107T
  • A4146G
  • C4272T
  • T4542C
  • C4803T
  • G5280A
  • C5910T
  • C6138T
  • T6165C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS3

  • NS3:V601A

    • capsid

  • capsid:A58G

    • env

  • env:V159A
  • env:L167F
  • env:L312F
    • Deletions
    None
    Insertions
    None

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