This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00039YN.1

Display Name: Democratic_Republic_of_the_Congo/LOC_00039YN.1/2020-07-28
E. Kinganda-Lusamaki, S. Whitmer, E. Lokilo-Lofiko, A. Amuri-Aziza, F. Muyembe-Mawete, J.C. Makangara-Cigolo, G. Makaya, F. Mbuyi, A. Whitesell, R. Kallay, M. Choi, C. Pratt, D. Mukadi-Bamuleka, H. Kavunga-Membo, M. Matondo-Kuamfumu, F. Mambu-Mbika, R. Ekila-Ifinji, T. Shoemaker, M. Stewart, J. Eng, A. Rajan, G.N. Soke, P.N. Fonjungo, J.O. Otshudiema, ..., P. Mbala

Submission details

Submission ID
OR084884.1
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-19 17:22:26 UTC
Date released
2024-09-19 17:26:57 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-09-19 17:22insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Alignment states and QC metrics

Completeness
91.22%
Length
18690
Total ambiguous nucs
7
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
1
Total SNPs
240
Total unknown nucs
1388

Sample details

Collection country
Democratic Republic of the Congo
Collection date
2020-07-28
Isolate name
Ebolavirus/H.sapiens-wt/COD/2020/Mbandaka-RDCEQT002124

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
OR084884.1
NCBI release date
2024-03-11
NCBI update date
2024-03-11

Nucleotide mutations

Substitutions

  • T43C
  • T160C
  • C180T
  • C230T
  • C280T
  • G360T
  • G381A
  • A388G
  • A491G
  • G500A
  • A619G
  • A622G
  • C856T
  • C1094T
  • T1156C
  • G1420A
  • T1540C
  • A1687G
    • Deletions
    None
    Insertions
    ins_11496:A

    Amino acid mutations

    Substitutions

    GP

  • GP:V310A
  • GP:G314R
  • GP:S377P
  • GP:L378P
  • GP:A417T
  • GP:S422P
  • GP:P430L
  • GP:S440G
  • GP:F443L
  • GP:S475G
  • GP:S476G
  • GP:I544T

    • L

  • L:V79I
  • L:E130D
  • L:P342S
  • L:I1183L
  • L:S1383N
  • L:R1405Q
  • L:A1517V
  • L:F1610P
  • L:S1720C
  • L:F1742S
  • L:S1747T
  • L:E2051D

    • NP

  • NP:I8V
  • NP:A11T
  • NP:I517T
  • NP:I527T
  • NP:T536A
  • NP:A540T
  • NP:T557I
  • NP:S644P

    • VP24

  • VP24:M212K

    • VP35

  • VP35:D18N
  • VP35:N204D

    • VP40

  • VP40:A202V
    • Deletions
    None
    Insertions
    None