This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000070T.1

Display Name: LOC_000070T.1
J. H. Scherret, M. Poidinger, J. S. Mackenzie, A. K. Broom, V. Deubel, W. I. Lipkin, T. Briese, E. A. Gould & R. A. Hall

Submission details

Submission ID
AF297850.1
Submitting group
Date submitted
2025-07-18 15:33:29 UTC
Date released
2025-07-18 15:34:06 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-18 15:33insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Queensland, Microbiology and Parasitology

Alignment and QC metrics

Completeness
4.99%
Length
545
Total ambiguous nucs
0
Total deleted nucs
6
Total frame shifts
0
Total inserted nucs
1
Total SNPs
70
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2000-12-26
Collection date (upper bound)
2000-12-26
Isolate name
K6590

INSDC

INSDC accession
NCBI release date
2000-12-26
NCBI update date
2016-07-14

Lineage

Lineage
1B

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T10197C
  • C10200T
  • C10203T
  • T10209C
  • A10212T
  • A10215C
  • A10221G
  • C10230T
  • C10251T
  • A10263G
  • C10284T
  • G10287A
  • C10292T
  • T10293C
  • G10309T
  • C10314A
  • C10317T
  • T10323C
    • Deletions
    10479-10484
    Insertions
    ins_10461:C

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS5

  • NS5:A871V
  • NS5:A877S
  • NS5:V904A
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue