This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000070T.1

Display Name: USA/LOC_000070T.1
Lanciotti, R. S.; Ebel, G. D.; Deubel, V.; Kerst, A. J.; Murri, S.; Meyer, R.; Bowen, M.; McKinney, N.; Morrill, W. E.; Crabtree, M. B.; Kramer, L. D.; Roehrig, J. T.

Submission details

Submission ID
AF404753.1
Submitting group
Date submitted
2025-06-03 04:34:06 UTC
Date released
2025-06-03 04:34:48 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-06-03 04:34insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centers for Disease Control & Prevention, Division of Vector-Borne Infectious Diseases

Alignment and QC metrics

Completeness
100.00%
Length
11029
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
17
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2002-07-23
Collection subdivision level 1
Maryland
Collection country
USA
Collection date (upper bound)
2002-07-23
Isolate name
WN MD 2000-crow265

Host

Host name scientific
Corvus
Host taxon id

INSDC

INSDC accession
NCBI release date
2002-07-23
NCBI update date
2002-07-23

Lineage

Lineage
1A

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C1465T
  • T1492C
  • A3270G
  • A3625T
  • C3774T
  • C4107T
  • G5280A
  • C5709T
  • A6243G
  • T6405C
  • T8235C
  • C8802T
  • C8811T
  • C10338T
  • C10341T
  • C10408T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:M34L

    • env

  • env:L167F
  • env:Y176H
    • Deletions
    None
    Insertions
    None

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