This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00001RG.1

Display Name: Uganda/LOC_00001RG.1/2022-10-10
Balinandi, S.; Whitmer, S.; Mulei, S.; Nassuna, C.; Pimundu, G.; Muyigi, T.; Kainulainen, M.; Shedroff, E.; Krapiunaya, I.; Scholte, F.; Nyakarahuka, L.; Tumusiime, A.; Kyondo, J.; Baluku, J.; Kiconco, J.; Harris, J. R.; Ario, A. R.; Kagirita, A.; Bosa, H. K.; Ssewanyana, I.; Nabadda, S.; Mwebesa, H. G.; Aceng, J. R.; Atwine, ..., J.

Submission details

Submission ID
OQ672966.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-20 08:36:56 UTC
Date released
2024-12-20 08:37:13 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-20 08:36insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Alignment states and QC metrics

Completeness
99.95%
Length
18869
Total ambiguous nucs
4
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
135
Total unknown nucs
0

Sample details

Earliest release date
2023-08-08
Collection country
Uganda
Collection date
2022-10-10
Collection date (lower bound)
2022-10-10
Collection date (upper bound)
2022-10-10
Isolate name
Ebolavirus/H.sapiens-wt/Uganda/2022/2022003632_C075

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
OQ672966.1
NCBI release date
2023-08-08
NCBI update date
2024-09-09

Nucleotide mutations

Substitutions

  • C7T
  • A8G
  • T32G
  • A309G
  • A314G
  • A496G
  • G575A
  • T718C
  • G982A
  • T1063C
  • A1537C
  • C1646T
  • A1669G
  • T1816G
  • C1837T
  • A1978G
  • G1984A
  • C2094T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    GP

  • GP:G3S
  • GP:S408N

    • L

  • L:K43R
  • L:K651N
  • L:A821V
  • L:I954V
  • L:D1383E
  • L:S1585P
  • L:V1600I
  • L:N1822D
  • L:P1877S
  • L:K1911R
  • L:N1916T

    • NP

  • NP:V40I
  • NP:S546L
  • NP:G645R
  • NP:L721F

    • VP30

  • VP30:V71I

    • VP35

  • VP35:N153S
  • VP35:I190T

    • VP40

  • VP40:R2K

    • sGP

  • sGP:G3S

    • ssGP

  • ssGP:G3S
    • Deletions
    None
    Insertions
    None