This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PJ5T.1

Display Name: LOC_000PJ5T.1
A. C. Marriott, T. Polyzoni, A. Antoniadis & P. A. Nuttall

Submission details

Submission ID
U04958.1.S
Submitting group
Date submitted
2025-07-18 15:35:17 UTC
Date released
2025-07-18 15:40:30 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-18 15:35insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Anthony C. Marriott, N.E.R.C. Institute of Virology and Environmental Microbiology, Mansfield Road, Oxford, OX1 3SR

Alignment and QC metrics S

Completeness S
100.00%
Length S
1659
Total ambiguous nucs S
0
Total deleted nucs S
30
Total frame shifts S
0
Total inserted nucs S
17
Total SNPs S
283
Total unknown nucs S
0

Sample details

Earliest release date
1994-01-25
Collection date (upper bound)
1994-01-25
Isolate name
AP92

INSDC

INSDC accession S
NCBI release date
1994-01-25

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:T23C
  • S:C38A
  • S:T49A
  • S:G54A
  • S:A61G
  • S:G67A
  • S:T79C
  • S:A81G
  • S:T88C
  • S:G91T
  • S:A92C
  • S:G99A
  • S:A109G
  • S:A118G
  • S:A130G
  • S:C154A
  • S:C160T
  • S:C166T
    • Deletions
    S:1523-1529, S:1545-1549, S:1585, S:1600-1602, S:1608-1610, S:1617-1626, S:1636
    Insertions
    ins_S:1553:AG, ins_S:1581:CAAAT, ins_S:1563:CGGCTGCA, ins_S:1566:AG

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:N9S
  • NP:E12D
  • NP:M13L
  • NP:R15K
  • NP:S39N
  • NP:F48Y
  • NP:F73Y
  • NP:A100T
  • NP:G101S
  • NP:V117I
  • NP:T124S
  • NP:G125S
  • NP:V141I
  • NP:A146T
  • NP:V163L
  • NP:M164V
  • NP:S165P
  • NP:L179I
    • Deletions
    None
    Insertions
    None

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