This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PH9L.1

Display Name: Guinea/LOC_000PH9L.1/2022-04-08
E. V. Naidenova, Y. M. Krasnov, K. S. Zakharov, D. A. Agafonov, A. M. Senichkina, N. P. Guseva, S. D. Katyshev, T. A. Polunina, N. V. Kotova, G. A. Gurkin, M. Y. Kartashov, A. V. Shipovalov, A. S. Kabanov, S. Boumbaly, M. G. Diallo & M. B. Bah

Submission details

Submission ID
PV168397.1.M
Submitting group
Date submitted
2025-07-18 15:35:17 UTC
Date released
2025-07-18 15:40:30 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-18 15:35insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Russian Antiplague Research Institute 'Microbe', Microbiology

Alignment and QC metrics M

Completeness M
32.78%
Length M
2910
Total ambiguous nucs M
0
Total deleted nucs M
0
Total frame shifts M
0
Total inserted nucs M
0
Total SNPs M
191
Total unknown nucs M
1151

Sample details

Earliest release date
2025-03-16
Collection subdivision level 1
N'Zerekore
Collection country
Guinea
Collection date
2022-04-08
Collection date (lower bound)
2022-04-08
Collection date (upper bound)
2022-04-08
Isolate name
5542

Host

Host name scientific
Rhipicephalus geigyi
Host taxon id

INSDC

INSDC accession M
NCBI release date
2025-03-16

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • M:A1577T
  • M:T1586G
  • M:T1587C
  • M:G1601A
  • M:G1604A
  • M:G1612A
  • M:T1616A
  • M:C1631A
  • M:A1640G
  • M:G1642A
  • M:G1646A
  • M:T1649G
  • M:A1652C
  • M:A1658G
  • M:C1661A
  • M:A1662G
  • M:T1673C
  • M:A1688G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:R507K
  • GPC:R517K
  • GPC:S524G
  • GPC:R579K
  • GPC:N592T
  • GPC:V598T
  • GPC:Y606F
  • GPC:R609K
  • GPC:T633S
  • GPC:T742A
  • GPC:T1045I
  • GPC:A1046V
  • GPC:Y1077F
  • GPC:S1103T
  • GPC:I1118V
  • GPC:V1137I
  • GPC:G1158E
  • GPC:L1210V
    • Deletions
    None
    Insertions
    None

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