This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Test organism (without alignment)
West Nile Virus
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LOC_000PH4W.1
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Display Name: Turkey/LOC_000PH4W.1/2017-05-08
A. Ozkul,
K. Ergunay &
A. Hanifehnezhad
Submission details
Submission ID
PV135959.1.L/PV135958.1.M/PV135957.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-18 15:35:17 UTC
Date released
2025-07-18 15:40:30 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-07-18 15:35
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Ankara university, virology
Alignment and QC metrics L
Completeness L
99.62%
Frame shifts L
RdRp:768-771(nt:2376-2387),RdRp:786-789(nt:2431-2442)
Length L
12036
Total ambiguous nucs L
2
Total deleted nucs L
70
Total frame shifts L
2
Total inserted nucs L
42
Total SNPs L
2595
Total unknown nucs L
0
Alignment and QC metrics M
Completeness M
99.27%
Frame shifts M
GPC:8-14(nt:113-134),GPC:36-38(nt:196-204),GPC:42(nt:214-216),GPC:46-47(nt:228-233),GPC:52-63(nt:246-280),GPC:65-66(nt:285-290),GPC:88-96(nt:353-380),GPC:108-113(nt:412-431),GPC:125-126(nt:463-470),GPC:175-192(nt:615-668),GPC:199-205(nt:687-706),GPC:221-227(nt:751-772)
Length M
5356
Total ambiguous nucs M
0
Total deleted nucs M
133
Total frame shifts M
12
Total inserted nucs M
162
Total SNPs M
1354
Total unknown nucs M
0
Alignment and QC metrics S
Completeness S
93.18%
Length S
1548
Total ambiguous nucs S
0
Total deleted nucs S
21
Total frame shifts S
0
Total inserted nucs S
11
Total SNPs S
279
Total unknown nucs S
0
Sample details
Earliest release date
2025-03-15
Collection subdivision level 1
Ankara
Collection country
Turkey
Collection date
2017-05-08
Collection date (lower bound)
2017-05-08
Collection date (upper bound)
2017-05-08
Isolate name
CCHFV_Turkey_2017
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession L
PV135959.1
INSDC accession M
PV135958.1
INSDC accession S
PV135957.1
NCBI release date
2025-03-15
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
T
58
C
L:
T
62
G
L:
C
63
A
L:
T
65
C
L:
T
70
G
L:
G
71
T
L:
C
76
A
L:
C
82
G
L:
A
91
G
L:
T
106
C
L:
A
113
C
L:
T
115
G
L:
T
131
A
L:
C
133
A
L:
C
136
T
L:
T
139
C
L:
G
142
A
L:
A
147
G
Show more
M
M:
G
38
A
M:
T
40
C
M:
T
44
C
M:
G
50
A
M:
A
51
G
M:
A
52
T
M:
G
56
T
M:
A
57
G
M:
T
59
G
M:
G
60
A
M:
G
62
A
M:
T
67
C
M:
T
68
C
M:
A
69
G
M:
A
70
C
M:
T
71
A
M:
G
76
A
M:
C
77
T
Show more
S
S:
G
54
A
S:
A
61
G
S:
G
67
A
S:
T
79
C
S:
A
81
G
S:
A
85
G
S:
T
88
C
S:
G
91
T
S:
A
92
C
S:
G
99
A
S:
A
118
G
S:
C
142
T
S:
C
154
T
S:
T
157
C
S:
C
166
T
S:
G
169
A
S:
T
175
A
S:
C
178
G
Show more
Deletions
L:42-56, L:2375, L:2388, L:2389, L:2422-2424, L:2443-2447, L:2453-2455, L:11840-11842, L:11921-11923, L:11931-11933, L:11946-11949, L:11979, L:11988-12002, L:12011, L:12012, L:12028-12031, L:12076-12081, M:111, M:112, M:135-159, M:210-213, M:217, M:218, M:226, M:227, M:348-352, M:376, M:377, M:411, M:462, M:558-566, M:627, M:628, M:669, M:686, M:693-699, M:707-719, M:747-750,...
Show more
Insertions
ins_S:1514:CAGGA, ins_S:1558:TCAGCT, ins_M:380:GAGG, ins_M:635:CC, ins_M:233:ATTCA, ins_M:290:CTGAGGCGCAG, ins_M:5307:ATCACCCCC, ins_M:284:GTGACTC, ins_M:5325:ACAA, ins_M:614:GACA, ins_M:5332:CAAAGCAGA, ins_M:204:AA, ins_M:5147:CGATGTCAGCAGAGCCTC, ins_M:5346:ACA, ins_M:5322:A, ins_M:195:CATC, ins_M:5338:C, ins_M:265:ACACAA, ins_M:590:GCAGTCACAACGGGA, ins_M:245:TCCACCAA, ins_M:579:AGA,...
Show more
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
S
4
F
GPC:
M
6
L
GPC:
G
39
V
GPC:
S
44
T
GPC:
S
68
Q
GPC:
G
69
V
GPC:
L
70
T
GPC:
L
105
T
GPC:
Q
115
L
GPC:
T
116
S
GPC:
A
117
D
GPC:
G
118
K
GPC:
T
120
I
GPC:
S
121
L
GPC:
A
122
T
GPC:
S
128
G
GPC:
L
129
S
GPC:
P
130
S
Show more
NP
NP:
N
9
S
NP:
E
12
D
NP:
M
13
L
NP:
R
15
K
NP:
F
48
Y
NP:
A
100
T
NP:
G
101
S
NP:
V
117
I
NP:
T
124
S
NP:
G
125
S
NP:
V
141
I
NP:
A
146
T
NP:
V
163
L
NP:
M
164
V
NP:
S
165
P
NP:
V
166
I
NP:
L
179
I
NP:
G
185
S
Show more
RdRp
RdRp:
D
2
E
RdRp:
I
13
L
RdRp:
S
19
T
RdRp:
N
24
S
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
L
64
I
RdRp:
E
66
K
RdRp:
S
67
T
RdRp:
R
70
Q
RdRp:
Q
74
L
RdRp:
E
75
D
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
K
91
Q
RdRp:
L
94
S
RdRp:
I
117
V
RdRp:
A
122
T
Show more
Deletions
GPC:7, GPC:15-33, GPC:40, GPC:41, GPC:76-87, GPC:107, GPC:124, GPC:155-159, GPC:193, GPC:206-220, RdRp:767, RdRp:790, RdRp:791
Insertions
ins_GPC:71:AD, ins_GPC:92:LSAVVS, ins_GPC:236:AIPA, ins_GPC:59:G, ins_GPC:16:QDVSANTHPVSTS, ins_GPC:103:RPATTVNAH, ins_GPC:172:GPQAT, ins_GPC:166:PPTAVTTG
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