This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0002AR3.1

Senegal/LOC_0002AR3.1/2022
O. Sene, S. N. Sagne, D. Ngom, M. Bocoum, M. K. Diallo, A. Khoule, E. T. Faye, S. M. Diop, I. Diallo, C. Loucoubar, M. Diallo, N. Dia, Y. Sall, B. Diop, M. Ndiaye, A. A. Sall, M. Weidmann, M. M. Diagne, M. Fall, O. Faye, E. Simon-Loriere, D. Diallo, M. A. Barry & G. Fall

Institut Pasteur, Dakar, Virology

Sample details

Collection date
2022
Earliest release date
2025-09-04
Sampling location
Senegal
Isolate name
ARD407209

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-17 13:06insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-09-04
INSDC accession L

Submission details

Submission ID
PP835507.1.L
Submitting group
Date submitted
2026-03-17 13:06:17 UTC
Date released
2026-03-17 13:14:11 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs L
289
Total inserted nucs L
52
Length L
12160 (100%)
Variant L
True

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • T10C
  • T65C
  • T70C
  • G93A
  • C100T
  • A220G
  • T254A
  • C284A
  • G285A
  • A298G
  • C313T
  • G328A
  • T340C
  • G351A
  • T550G
  • G553A
  • C568T
  • G619A
Deletions
N/A
Insertions

L

ins_12108:TTCATCGTCATCGTTATTATCTTGGGGTGTGGGGGGAACGATTTCTTTGAGA

Amino acid mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

RdRp

  • RdRp:S6N
  • RdRp:Y60N
  • RdRp:R70K
  • RdRp:R92K
  • RdRp:I505T
  • RdRp:A719T
  • RdRp:T767A
  • RdRp:K769N
  • RdRp:R770K
  • RdRp:K809R
  • RdRp:F810L
  • RdRp:G812E
  • RdRp:T876S
  • RdRp:A1038T
  • RdRp:G1047E
  • RdRp:S1063G
  • RdRp:V1228I
  • RdRp:N1367D
Deletions
N/A
Insertions
N/A

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