This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0002AKF.1

Senegal/LOC_0002AKF.1/2022
O. Sene, S. N. Sagne, D. Ngom, M. Bocoum, M. K. Diallo, A. Khoule, E. T. Faye, S. M. Diop, I. Diallo, C. Loucoubar, M. Diallo, N. Dia, Y. Sall, B. Diop, M. Ndiaye, A. A. Sall, M. Weidmann, M. M. Diagne, M. Fall, O. Faye, E. Simon-Loriere, D. Diallo, M. A. Barry & G. Fall

Institut Pasteur, Dakar, Virology

Sample details

Collection date
2022
Earliest release date
2025-09-04
Sampling location
Senegal
Isolate name
ARD401184

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-12 21:08insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-09-04
INSDC accession L segment

Host

Host

Submission details

Submission ID
PP835510.1.L
Submitting group
Date submitted
2026-06-12 21:07:57 UTC
Date released
2026-06-12 21:12:21 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)

Files

Annotations

Alignment and QC

Total SNPs L segment
305
Total inserted nucs L segment
42
Length L segment
12118 (99.7%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 reference

Substitutions

L segment

  • T62C
  • T65C
  • T70C
  • C75T
  • G93A
  • C94T
  • G130T
  • T151C
  • C244T
  • T254A
  • G286A
  • A298G
  • C313T
  • T340C
  • C343T
  • T382C
  • A409G
  • C427T
Deletions
N/A
Insertions

L segment

ins_12108:TTCATCGTCATCGTTATTATCTTGGGGTGTGGGGGGAACGAT

Amino acid substitutions

Substitutions called relative to the NC_005301.3 reference

Substitutions

RdRp

  • RdRp:S6N
  • RdRp:Y60N
  • RdRp:I505T
  • RdRp:T767A
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:T876S
  • RdRp:A1038T
  • RdRp:G1047E
  • RdRp:V1228I
  • RdRp:N1367D
  • RdRp:N1514S
  • RdRp:M1647L
  • RdRp:P1660T
  • RdRp:T1675N
  • RdRp:R1676K
  • RdRp:I1949V
  • RdRp:I1996V
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue