This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001H8HP.1

South_Africa/LOC_001H8HP.1/1984
M. Zivcec, L. Guerrero, C. Albarino, C. Spiropoulou, P. E. Rollin, T. G. Ksiazek, R. Swanepoel & S. T. Nichol

Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Sample details

Collection date
1984
Earliest release date
2017-09-06
Sampling location
South Africa
Isolate name
SPU41_84_813060_M

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2017-09-06
INSDC accession M segment

Host

Host

Submission details

Submission ID
MF511240.1.M
Submitting group
Date submitted
2026-07-20 10:41:01 UTC
Date released
2026-07-20 10:43:49 UTC

Clade & Lineage

Closest reference M segment
M (MH396653.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs M segment
506
Total deleted nucs M segment
1
Total ambiguous nucs M segment
138
Total unknown nucs M segment
1
Length M segment
5334 (95.2%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

M segment

  • G65A
  • T78C
  • G103A
  • T116C
  • C118T
  • T122C
  • G124A
  • A127G
  • C133T
  • A139G
  • A143G
  • A149C
  • C151T
  • C155T
  • G166A
  • A171G
  • C185G
  • A204G
Deletions

M segment

5166
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & MH396653.1 references

Substitutions

GPC

  • GPC:F10L
  • GPC:K19E
  • GPC:N21H
  • GPC:P23S
  • GPC:H33D
  • GPC:D39G
  • GPC:L52S
  • GPC:P53S
  • GPC:V54I
  • GPC:P56H
  • GPC:D57N
  • GPC:P63S
  • GPC:S64T
  • GPC:A67T
  • GPC:L70S
  • GPC:K85E
  • GPC:L89P
  • GPC:E91G
Deletions
N/A
Insertions
N/A

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