This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001H4YX.1

Russia/LOC_001H4YX.1/2014
A. Volynkina, A. Burlachenko, Y. Lisitskaya & E. Kotenev

Stavropol State Research Anti-Plague Institute, Laboratory of Natural-Focal Infections

Sample details

Collection date
2014
Earliest release date
2016-06-01
Sampling location
Russia
Isolate name
34-ROS/HU-2014

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2016-06-01
INSDC accession S segment

Host

Host

Submission details

Submission ID
KR815126.1.S
Submitting group
Date submitted
2026-09-09 16:37:06 UTC
Date released
2026-09-09 16:39:03 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
81
Length S segment
538 (29.8%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • C99T
  • A105G
  • G118A
  • C123T
  • C126T
  • T141C
  • C150T
  • G155A
  • T159A
  • T166C
  • C171T
  • G174A
  • A186G
  • T195C
  • C201T
  • A213G
  • T219C
  • C228T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:V27M
  • NP:S39N
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:Q179L
  • NP:D199E
Deletions
N/A
Insertions
N/A

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