This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001GM2A.1

Display Name: Turkey/LOC_001GM2A.1/2017
M. O. Timurkan & H. Aydin

Sample details

Collection date
2017
Collection date (lower bound)
2017-01-01
Collection date (upper bound)
2017-12-31
Earliest release date
2020-03-28
Collection country
Turkey
Isolate name
TR/TUNCELI2015/OHE/2/M

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-13 18:06insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Ataturk University, Faculty of Veterinary Medicine, Departmet of Virology

INSDC

NCBI release date
2020-03-28
INSDC accession M

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics M

Length M
422
Total SNPs M
72
Total inserted nucs M
0
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
7.73%
Total stop codons M
0

Submission details

Submission ID
MT178309.1.M
Submitting group
Date submitted
2026-02-13 18:06:39 UTC
Date released
2026-02-13 18:09:50 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

M

  • M:T4672C
  • M:A4685G
  • M:A4690T
  • M:A4709G
  • M:G4714A
  • M:A4716G
  • M:C4718A
  • M:T4719G
  • M:C4720T
  • M:A4723G
  • M:A4725G
  • M:A4726G
  • M:T4738A
  • M:T4739C
  • M:G4741A
  • M:C4744T
  • M:A4747G
  • M:T4750C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3 & MH396653.1 references

    Substitutions

    GPC

  • GPC:K1533E
  • GPC:E1534D
  • GPC:N1541D
  • GPC:K1543R
  • GPC:L1544S
  • GPC:Q1546R
  • GPC:N1564D
  • GPC:G1590S
  • GPC:I1591V
  • GPC:V1595L
  • GPC:I1597V
  • GPC:F1600L
  • GPC:T1601L
  • GPC:T1604A
  • GPC:I1607V
  • GPC:I1610V
  • GPC:R1618K
  • GPC:K1648R
  • GPC:N1655S
    • Deletions
    None
    Insertions
    None

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