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LOC_001GAQA.1
Download
Download FASTA
Download metadata TSV
Turkmenistan/LOC_001GAQA.1/1973
A. N. Lukashev,
A. S. Klimentov,
S. E. Smirnova,
T. K. Dzagurova,
J. F. Drexler &
A. P. Gmyl
Chumakov Institute of Poliomyelitis and Viral Encephalitides
Sample details
Collection date
1973
Earliest release date
2016-12-07
Sampling location
Turkmenistan
Isolate name
K168_125
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-05 16:08
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2016-12-07
INSDC accession L
KX013459.1
INSDC accession M
KX013460.1
INSDC accession S
KX013461.1
Submission details
Submission ID
KX013459.1.L/KX013460.1.M/KX013461.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-05 16:08:33 UTC
Date released
2026-03-05 16:11:24 UTC
Host
Host
Ixodoidea
Files
Annotations
LOC_001GAQA.1.embl
Alignment and QC
Total SNPs L
1613
Total inserted nucs L
36
Total deleted nucs L
1
Length L
12120 (99.8%)
Variant L
False
Total SNPs M
623
Total inserted nucs M
1
Total deleted nucs M
12
Length M
5323 (97.7%)
Variant M
False
Total SNPs S
209
Total deleted nucs S
1
Length S
1617 (89.6%)
Variant S
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
A
35
G
G
43
C
C
48
T
C
59
T
T
62
C
C
64
T
T
65
G
G
71
T
C
85
T
A
91
G
G
93
A
A
109
G
G
112
A
T
121
C
T
131
A
C
136
T
T
151
C
T
154
C
Show more
M segment
C
19
T
T
63
C
T
64
C
G
65
A
T
67
C
T
68
C
G
72
A
A
76
G
T
78
C
T
79
C
G
80
A
A
84
G
T
87
C
T
94
C
T
101
C
A
108
G
T
116
C
C
118
T
Show more
S segment
C
31
G
T
32
C
G
34
A
G
35
A
A
45
G
C
48
T
T
63
C
A
84
G
A
98
T
A
102
G
T
111
C
C
126
T
T
141
C
C
150
T
T
166
C
C
171
T
A
173
G
G
174
A
Show more
Deletions
L segment
12000
M segment
5209, 5285-5295
S segment
1611
Insertions
L segment
ins_66:CC, ins_11931:GT, ins_12045:CTATTTTAGTGCAATTCTTTCAACCATTAGT, ins_12108:G
M segment
ins_5166:A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
Y
7
C
GPC:
F
10
L
GPC:
C
15
Y
GPC:
K
19
G
GPC:
N
21
H
GPC:
P
23
L
GPC:
N
31
K
GPC:
H
33
N
GPC:
V
34
A
GPC:
M
35
V
GPC:
P
38
S
GPC:
D
39
S
GPC:
D
40
N
GPC:
P
44
S
GPC:
P
46
S
GPC:
V
48
A
GPC:
S
49
R
GPC:
L
52
P
Show more
NP
NP:
Y
20
F
NP:
K
45
R
NP:
D
116
E
NP:
N
150
H
NP:
E
161
D
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
P
321
S
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
Q
74
K
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
T
165
M
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
T
200
A
RdRp:
S
205
P
RdRp:
N
206
Y
Show more
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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