This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001GAJN.1

Iran/LOC_001GAJN.1/2015
N. Shahhosseini & S. Chinikar

Bernhard Nocht Institute for Tropical Medicine

Sample details

Collection date
2015
Earliest release date
2017-02-28
Sampling location
Iran
Isolate name
SRR

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-05 16:08insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-02-28
INSDC accession S

Submission details

Submission ID
KU707901.1.S
Submitting group
Date submitted
2026-03-05 16:08:33 UTC
Date released
2026-03-05 16:11:24 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs S
221
Total inserted nucs S
16
Length S
1665 (91.3%)
Variant S
False

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • T16A
  • C31G
  • T32C
  • G34A
  • A45G
  • C48T
  • A84G
  • A98T
  • A102G
  • C126T
  • T141C
  • C150T
  • T156C
  • T166C
  • C171T
  • A173G
  • G174A
  • G180A
Deletions
N/A
Insertions

S segment

ins_0:TCTCAAAGAAACACGT

Amino acid mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:Y20F
  • NP:K45R
  • NP:S52G
  • NP:D116E
  • NP:N150H
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:S275N
  • NP:K354R
  • NP:R428K
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue