This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001G8A7.1

Display Name: Italy/LOC_001G8A7.1/2017-04-21
E. Mancuso, A. Polci, S. D'Alessio, L. Toma, M. Di Luca, M. Orsini, M. Di Domenico, M. Marcacci, G. Mancini, F. Spina, M. Goffredo & F. Monaco

Sample details

Collection date
2017-04-21
Collection date (lower bound)
2017-04-21
Collection date (upper bound)
2017-04-21
Earliest release date
2018-08-20
Collection country
Italy
Isolate name
HrTE24364

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-06 07:31insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise 'G. Caporale', Viral, Foreign Deseases of Animals

INSDC

NCBI release date
2018-08-20
INSDC accession S

Host

Host taxon id
Host name scientific
Hyalomma rufipes

Alignment and QC metrics S

Length S
744
Total SNPs S
20
Total inserted nucs S
1
Total deleted nucs S
844
Total ambiguous nucs S
0
Total unknown nucs S
100
Total frame shifts S
1
Frame shifts S
NP:397-483(nt:1242-1504)
Completeness S
88.94%
Total stop codons S
0

Submission details

Submission ID
MH576575.1.S
Submitting group
Date submitted
2026-02-06 07:31:19 UTC
Date released
2026-02-06 07:35:27 UTC

Lineage

Segment S Lineage
III

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:A138T
  • S:G229A
  • S:T253C
  • S:T393G
  • S:A395T
  • S:G397T
  • S:G1247T
  • S:A1279G
  • S:C1282T
  • S:T1306G
  • S:C1309T
  • S:C1348T
  • S:A1354G
  • S:A1426G
  • S:C1447T
  • S:C1468T
  • S:C1523T
  • S:G1586T
  • S:C1659A
  • S:G1661A
    • Deletions
    S:398-1241
    Insertions
    ins_S:1581:T

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:D28V
  • NP:K114Y
    • Deletions
    NP:115-396
    Insertions
    None

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