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LOC_001G7V3.1
Download
Download FASTA
Download metadata TSV
Display Name: USA/LOC_001G7V3.1/2018-06
D. W. Hawman,
E. Haddock,
K. Meade-White,
B. Williamson,
P. W. Hanley,
K. Rosenke,
T. Komeno,
Y. Furuta,
B. B. Gowen,
H. Feldmann &
F. Feldmann
Sample details
Collection date
2018-06
Collection date (lower bound)
2018-06-01
Collection date (upper bound)
2018-06-30
Earliest release date
2018-07-03
Collection country
USA
Isolate name
10200
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-13 18:06
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Rocky Mountain Labs NIH/NIAD, Laboratory of Virology
INSDC
NCBI release date
2018-07-03
INSDC accession L
MH483989.1
INSDC accession M
MH483988.1
INSDC accession S
MH483987.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
12083
Total SNPs L
14
Total inserted nucs L
0
Total deleted nucs L
0
Total ambiguous nucs L
2
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
99.78%
Total stop codons L
0
Alignment and QC metrics M
Length M
5338
Total SNPs M
662
Total inserted nucs M
0
Total deleted nucs M
0
Total ambiguous nucs M
4
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
97.75%
Total stop codons M
0
Alignment and QC metrics S
Length S
1636
Total SNPs S
124
Total inserted nucs S
0
Total deleted nucs S
1
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
90.64%
Total stop codons S
0
Submission details
Submission ID
MH483989.1.L/MH483988.1.M/MH483987.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-13 18:06:39 UTC
Date released
2026-02-13 18:09:50 UTC
Files
Annotations
LOC_001G7V3.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L
L:
C
1495
T
L:
A
1879
G
L:
G
3216
A
L:
C
4117
A
L:
C
5054
A
L:
T
5065
A
L:
C
5100
A
L:
C
5798
T
L:
A
5830
T
L:
T
5875
C
L:
G
8896
A
L:
G
9764
A
L:
G
11374
A
L:
C
11761
T
M
M:
G
65
A
M:
T
78
C
M:
T
81
C
M:
C
82
T
M:
G
103
A
M:
G
113
A
M:
T
115
C
M:
T
116
C
M:
C
118
T
M:
T
122
C
M:
G
124
A
M:
A
127
G
M:
C
133
T
M:
A
139
G
M:
G
142
A
M:
A
143
G
M:
A
149
C
M:
C
151
T
Show more
S
S:
T
16
A
S:
T
20
G
S:
C
31
G
S:
G
34
A
S:
A
38
G
S:
A
51
G
S:
A
83
G
S:
A
84
G
S:
A
98
T
S:
A
162
C
S:
A
173
G
S:
C
183
T
S:
A
186
G
S:
A
213
G
S:
T
219
C
S:
G
231
A
S:
A
255
G
S:
T
279
C
Show more
Deletions
S:1562
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
V
9
I
GPC:
F
10
L
GPC:
K
19
E
GPC:
N
21
H
GPC:
P
23
S
GPC:
G
26
E
GPC:
E
28
R
GPC:
N
31
K
GPC:
H
33
D
GPC:
V
34
T
GPC:
D
39
G
GPC:
S
41
N
GPC:
Q
42
P
GPC:
P
44
S
GPC:
P
53
S
GPC:
V
54
I
GPC:
P
56
L
GPC:
S
64
T
Show more
NP
NP:
K
15
R
NP:
Y
20
F
NP:
K
45
R
NP:
A
124
T
NP:
N
125
G
NP:
Q
179
L
NP:
R
195
H
NP:
V
246
I
NP:
G
301
S
NP:
R
428
K
NP:
I
436
V
RdRp
RdRp:
G
1047
E
RdRp:
P
1660
T
RdRp:
T
1675
N
RdRp:
V
3230
I
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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