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LOC_001G7U5.1
Download
Download FASTA
Download metadata TSV
Display Name: India/LOC_001G7U5.1/2010
P. D. Yadav
Sample details
Collection date
2010
Collection date (lower bound)
2010-01-01
Collection date (upper bound)
2010-12-31
Earliest release date
2020-03-22
Collection country
India
Collection subdivision level 1
Ahmadabad District, Gujarat State
Isolate name
NIV1040505
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-06 07:31
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
National Institute of Virology, Maximum Containment Laboratory
INSDC
NCBI release date
2020-03-22
INSDC accession L
MH396640.1
INSDC accession M
MH396641.1
INSDC accession S
MH396642.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
12128
Total SNPs L
1642
Total inserted nucs L
46
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
99.79%
Total stop codons L
0
Alignment and QC metrics M
Length M
7002
Total SNPs M
645
Total inserted nucs M
1646
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
99.81%
Total stop codons M
0
Alignment and QC metrics S
Length S
1652
Total SNPs S
224
Total inserted nucs S
1
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
98.74%
Total stop codons S
0
Submission details
Submission ID
MH396640.1.L/MH396641.1.M/MH396642.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-06 07:31:19 UTC
Date released
2026-02-06 07:35:27 UTC
Lineage
Segment S Lineage
IV.2
Files
Annotations
LOC_001G7U5.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
A
35
G
L:
G
43
T
L:
T
49
C
L:
C
63
G
L:
C
64
T
L:
T
65
C
L:
T
66
C
L:
T
68
C
L:
G
69
A
L:
G
71
C
L:
C
76
T
L:
C
85
T
L:
G
88
A
L:
G
93
A
L:
A
109
G
L:
C
117
A
L:
A
124
G
L:
T
131
A
Show more
M
M:
A
11
C
M:
C
85
T
M:
T
86
C
M:
T
100
C
M:
A
104
T
M:
A
107
G
M:
G
110
A
M:
C
115
T
M:
A
117
G
M:
C
119
T
M:
T
122
C
M:
C
126
T
M:
A
128
G
M:
G
138
A
M:
G
143
A
M:
A
146
G
M:
G
147
A
M:
G
149
A
Show more
S
S:
T
48
C
S:
G
54
A
S:
A
61
G
S:
C
64
T
S:
G
67
A
S:
T
79
C
S:
G
99
A
S:
A
118
G
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
C
178
A
S:
T
182
C
S:
G
190
A
S:
G
196
A
S:
C
214
T
S:
C
217
T
S:
G
229
A
Show more
Deletions
None
Insertions
ins_L:58:T, ins_L:11917:CA, ins_L:12054:TACAATTTT, ins_L:12083:ACTATTC, ins_L:12108:TTTATTATTTCTGGGGTGTGGGGGGAC, ins_M:5170:G, ins_M:5366:CAGTCCTACTTGCAGTTCTGAAGAATATTTCTTTGTTTATGATGCCATTACAGGAATTTGTAAGTGTCTGGGTTCGAGATCCTAGGATTCAGAAGGAGGACTTCTGGCATTCTTACATTGACTATGAGATATGTATTCATACTAATAGCATGTGTTTTACAATGAAAACATCCTGTGTACGAAGAAGATATAGAGAATTCGTGTGGCTGAGGCAGAGACTCCAAAGTAATGCGTTGCTGGTACAACTGC...
Show more
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
M
6
I
GPC:
A
8
V
GPC:
I
9
V
GPC:
G
16
S
GPC:
E
19
K
GPC:
E
26
G
GPC:
R
28
E
GPC:
T
34
V
GPC:
P
42
Q
GPC:
S
44
P
GPC:
P
47
L
GPC:
S
53
P
GPC:
I
54
V
GPC:
L
56
P
GPC:
T
65
A
GPC:
P
80
S
GPC:
P
81
S
Show more
NP
NP:
R
15
K
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
K
354
R
NP:
V
436
I
NP:
M
446
I
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
K
91
T
RdRp:
I
114
V
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
V
RdRp:
K
275
R
RdRp:
I
279
V
Show more
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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