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LOC_001G7S9.1
Download
Download FASTA
Download metadata TSV
Display Name: India/LOC_001G7S9.1/2017
P. D. Yadav
Sample details
Collection date
2017
Collection date (lower bound)
2017-01-01
Collection date (upper bound)
2017-12-31
Earliest release date
2020-03-22
Collection country
India
Collection subdivision level 1
Rajkot District, Gujarat State
Isolate name
NIV1733666
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-13 18:06
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
National Institute of Virology, Maximum Containment Laboratory
INSDC
NCBI release date
2020-03-22
INSDC accession L
MH396673.1
INSDC accession M
MH396674.1
INSDC accession S
MH396675.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
12228
Total SNPs L
1642
Total inserted nucs L
121
Total deleted nucs L
1
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
100.00%
Total stop codons L
0
Alignment and QC metrics M
Length M
5337
Total SNPs M
347
Total inserted nucs M
1
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
97.78%
Total stop codons M
0
Alignment and QC metrics S
Length S
1672
Total SNPs S
222
Total inserted nucs S
15
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
91.75%
Total stop codons S
0
Submission details
Submission ID
MH396673.1.L/MH396674.1.M/MH396675.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-13 18:06:39 UTC
Date released
2026-02-13 18:09:50 UTC
Files
Annotations
LOC_001G7S9.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L
L:
T
1
A
L:
T
10
C
L:
G
23
T
L:
A
35
G
L:
G
43
C
L:
C
48
T
L:
T
49
C
L:
C
59
T
L:
C
64
T
L:
T
65
G
L:
G
71
T
L:
A
72
T
L:
C
85
T
L:
G
93
A
L:
A
109
G
L:
G
112
A
L:
T
121
C
L:
T
131
A
Show more
M
M:
G
51
A
M:
A
53
G
M:
G
65
A
M:
G
72
A
M:
T
78
C
M:
A
97
G
M:
C
133
T
M:
G
145
A
M:
T
148
C
M:
A
149
C
M:
C
151
T
M:
C
155
T
M:
G
166
A
M:
A
171
G
M:
T
181
A
M:
C
185
G
M:
A
204
G
M:
C
228
T
Show more
S
S:
T
16
A
S:
C
31
G
S:
T
32
C
S:
G
34
A
S:
A
38
G
S:
A
45
G
S:
C
48
T
S:
A
84
G
S:
A
98
T
S:
A
102
G
S:
C
126
T
S:
T
141
C
S:
C
150
T
S:
G
153
A
S:
T
166
C
S:
A
173
G
S:
C
183
T
S:
A
186
G
Show more
Deletions
L:12029
Insertions
ins_L:0:CCTTGACTGG, ins_L:66:CC, ins_L:11931:AT, ins_L:12108:TACCTTTCATTTCAGTTTGATTATTTCTAGGGTGTGGGGGGAACGATTTCTTTACAGGCAATCTTGGCTTCAACTGGGATTCAGATTGAACATGCCGTCTGTGTGTA, ins_M:5166:A, ins_S:0:CTCAAAGAAACACGT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
I
3
M
GPC:
N
21
H
GPC:
P
23
S
GPC:
E
28
G
GPC:
N
31
K
GPC:
H
33
D
GPC:
D
39
G
GPC:
P
47
L
GPC:
V
54
F
GPC:
S
64
T
GPC:
P
66
L
GPC:
G
69
R
GPC:
V
76
P
GPC:
S
80
P
GPC:
I
82
A
GPC:
T
83
I
GPC:
P
96
L
GPC:
V
102
I
Show more
NP
NP:
Y
20
F
NP:
K
45
R
NP:
D
116
E
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
H
56
Y
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
I
RdRp:
I
114
V
RdRp:
I
157
M
RdRp:
T
163
V
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
V
214
I
Show more
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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