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LOC_001G7PF.1
Download
Download FASTA
Download metadata TSV
Display Name: India/LOC_001G7PF.1/2016
P. D. Yadav
Sample details
Collection date
2016
Collection date (lower bound)
2016-01-01
Collection date (upper bound)
2016-12-31
Earliest release date
2020-03-22
Collection country
India
Collection subdivision level 1
Vadodara District, Gujarat State
Isolate name
NIV1614467
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-13 18:06
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
National Institute of Virology, Maximum Containment Laboratory
INSDC
NCBI release date
2020-03-22
INSDC accession L
MH396664.1
INSDC accession M
MH396665.1
INSDC accession S
MH396666.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
12141
Total SNPs L
1642
Total inserted nucs L
47
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
99.88%
Total stop codons L
0
Alignment and QC metrics M
Length M
5402
Total SNPs M
1253
Total inserted nucs M
42
Total deleted nucs M
41
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
100.00%
Total stop codons M
0
Alignment and QC metrics S
Length S
1823
Total SNPs S
298
Total inserted nucs S
32
Total deleted nucs S
7
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
99.56%
Total stop codons S
0
Submission details
Submission ID
MH396664.1.L/MH396665.1.M/MH396666.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-13 18:06:39 UTC
Date released
2026-02-13 18:09:50 UTC
Files
Annotations
LOC_001G7PF.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
L
L:
G
23
T
L:
A
35
G
L:
G
43
T
L:
T
49
C
L:
C
63
G
L:
C
64
T
L:
T
65
C
L:
T
66
C
L:
T
68
C
L:
G
69
A
L:
G
71
C
L:
C
85
T
L:
G
88
A
L:
G
93
A
L:
A
109
G
L:
C
117
A
L:
A
124
G
L:
T
131
A
Show more
M
M:
G
1
A
M:
C
4
T
M:
A
5
C
M:
G
8
T
M:
C
10
A
M:
G
11
T
M:
A
12
C
M:
A
13
C
M:
T
14
G
M:
C
15
T
M:
C
16
T
M:
C
18
T
M:
C
20
G
M:
C
21
G
M:
G
24
A
M:
G
29
A
M:
C
30
G
M:
G
31
T
Show more
S
S:
T
16
A
S:
C
31
G
S:
C
66
T
S:
A
98
T
S:
A
102
G
S:
C
126
T
S:
C
138
A
S:
T
147
C
S:
C
150
T
S:
G
153
A
S:
T
156
C
S:
T
166
C
S:
A
173
G
S:
G
174
A
S:
A
186
G
S:
C
192
T
S:
A
193
G
S:
C
201
T
Show more
Deletions
M:5211-5214, M:5244, M:5268-5303, S:1570, S:1682-1687
Insertions
ins_L:58:T, ins_L:11917:CA, ins_L:12053:CTAC, ins_L:12086:CTACTATCCCAC, ins_L:12108:TTTATTATTTCTGGGGTGTGGGGGGAAC, ins_M:0:CACACCGATCACATCACTCTTTCCCTAC, ins_M:5401:TGCGTGCCGCCACT, ins_S:0:GT, ins_S:1729:ACTCAT, ins_S:1771:AAAGGAGCCATGTGTGGAGAGCCT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
GPC
GPC:
M
1
N
GPC:
L
2
M
GPC:
F
3
L
GPC:
H
4
P
GPC:
F
5
L
GPC:
E
6
K
GPC:
H
7
S
GPC:
I
11
T
GPC:
V
14
I
GPC:
F
15
L
GPC:
I
18
L
GPC:
L
19
F
GPC:
G
23
S
GPC:
L
25
V
GPC:
A
26
T
GPC:
D
27
S
GPC:
E
28
G
GPC:
A
29
G
Show more
NP
NP:
Y
20
F
NP:
K
45
R
NP:
S
52
G
NP:
V
83
A
NP:
D
116
E
NP:
A
124
S
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
A
307
V
NP:
Q
405
L
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
V
RdRp:
K
275
R
Show more
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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