This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
CCHF (Multi-Ref)
SeqSets
Login
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
CCHF (Multi-Ref)
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Enterovirus
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
CCHF (Multi-Ref)
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_001G7NH.1
Download
Download FASTA
Download metadata TSV
Display Name: India/LOC_001G7NH.1/2016
P. D. Yadav
Sample details
Collection date
2016
Collection date (lower bound)
2016-01-01
Collection date (upper bound)
2016-12-31
Earliest release date
2020-03-22
Collection country
India
Collection subdivision level 1
Bhuj District, Gujarat State
Isolate name
NIV164392
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-13 18:06
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
National Institute of Virology, Maximum Containment Laboratory
INSDC
NCBI release date
2020-03-22
INSDC accession L
MH396661.1
INSDC accession M
MH396662.1
INSDC accession S
MH396663.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
12182
Total SNPs L
1656
Total inserted nucs L
79
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
99.96%
Total stop codons L
0
Alignment and QC metrics M
Length M
5375
Total SNPs M
391
Total inserted nucs M
14
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
98.24%
Total stop codons M
0
Alignment and QC metrics S
Length S
1739
Total SNPs S
279
Total inserted nucs S
7
Total deleted nucs S
15
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
96.73%
Total stop codons S
0
Submission details
Submission ID
MH396661.1.L/MH396662.1.M/MH396663.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-13 18:06:39 UTC
Date released
2026-02-13 18:09:50 UTC
Files
Annotations
LOC_001G7NH.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L
L:
A
6
G
L:
A
7
C
L:
G
23
T
L:
A
35
G
L:
G
43
T
L:
T
49
C
L:
T
60
C
L:
C
63
G
L:
C
64
T
L:
T
65
C
L:
T
66
C
L:
T
68
C
L:
G
69
A
L:
G
71
C
L:
C
76
T
L:
C
85
T
L:
G
88
A
L:
G
93
A
Show more
M
M:
A
1
C
M:
A
2
C
M:
A
3
T
M:
G
65
A
M:
T
78
C
M:
T
96
C
M:
A
100
T
M:
G
106
A
M:
C
111
T
M:
T
116
C
M:
A
127
G
M:
C
133
T
M:
G
134
A
M:
G
145
A
M:
A
149
C
M:
C
155
T
M:
C
160
T
M:
G
166
A
Show more
S
S:
T
16
A
S:
C
31
G
S:
T
32
C
S:
G
34
A
S:
A
45
G
S:
C
48
T
S:
T
63
C
S:
A
69
G
S:
A
84
G
S:
A
98
T
S:
A
102
G
S:
C
126
T
S:
T
141
C
S:
C
150
T
S:
T
166
C
S:
A
173
G
S:
G
174
A
S:
G
180
A
Show more
Deletions
S:1653-1667
Insertions
ins_L:58:T, ins_L:11931:AT, ins_L:12054:TACAATTTT, ins_L:12083:ACTATTC, ins_L:12108:TTTATTATTTCTGGGGTGTGGGGGGAACGATCTGAAGAGCACACTTATGAACTCAAGTAA, ins_M:0:AGACACACACCAT, ins_M:5166:G, ins_S:0:AACACGT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
M
6
I
GPC:
A
8
V
GPC:
F
10
L
GPC:
G
16
S
GPC:
N
21
H
GPC:
P
23
S
GPC:
N
31
K
GPC:
H
33
D
GPC:
D
39
G
GPC:
D
40
N
GPC:
S
41
N
GPC:
P
47
L
GPC:
S
64
T
GPC:
T
65
A
GPC:
P
81
S
GPC:
L
87
F
GPC:
E
91
K
Show more
NP
NP:
Y
20
F
NP:
K
45
R
NP:
D
116
E
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
K
354
R
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
K
91
T
RdRp:
I
114
V
RdRp:
A
122
T
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
V
RdRp:
A
263
S
Show more
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue