This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001G7A8.1

Display Name: Uganda/LOC_001G7A8.1/2015-11-08
S. Balinandi, K. Patel, J. Ojwang, J. Kyondo, S. Mulei, A. Tumusiime, B. Lubwama, L. Nyakarahuka, J. D. Klena, J. Lutwama, U. Strher, S. T. Nichol, T. R. Shoemaker & U. Stroeher

Sample details

Collection date
2015-11-08
Collection date (lower bound)
2015-11-08
Collection date (upper bound)
2015-11-08
Earliest release date
2018-04-17
Collection country
Uganda
Isolate name
Nakaseke_2015

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-13 18:06insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
CDC, VSPB

INSDC

NCBI release date
2018-04-17
INSDC accession S

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics S

Length S
1610
Total SNPs S
274
Total inserted nucs S
16
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
88.26%
Total stop codons S
0

Submission details

Submission ID
MH178082.1.S
Submitting group
Date submitted
2026-02-13 18:06:39 UTC
Date released
2026-02-13 18:09:50 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S

  • S:T16G
  • S:C31G
  • S:A45G
  • S:C48T
  • S:A62C
  • S:A65G
  • S:A69G
  • S:A83G
  • S:A84G
  • S:A93G
  • S:A98T
  • S:G106A
  • S:A108T
  • S:A114C
  • S:T128A
  • S:C138T
  • S:T141C
  • S:C150T
    • Deletions
    None
    Insertions
    ins_S:0:ACTCAAAGAAACACGT

    Amino acid mutations

    Mutations called relative to the NC_005301.3 & OL774851.1 references

    Substitutions

    NP

  • NP:N8T
  • NP:N9S
  • NP:K15R
  • NP:Y20F
  • NP:G23S
  • NP:F30Y
  • NP:K45R
  • NP:S52G
  • NP:D116G
  • NP:Q179L
  • NP:D199E
  • NP:N221D
  • NP:R270K
  • NP:S275K
  • NP:I277V
  • NP:A307P
  • NP:Y311F
  • NP:T320S
  • NP:Q370E
  • NP:R428K
    • Deletions
    None
    Insertions
    None

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