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LOC_001G5F0.1
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Display Name: Turkey/LOC_001G5F0.1/2004
M. Zivcec,
L. Guerrero,
C. Albarino,
C. Spiropoulou,
P. E. Rollin,
T. G. Ksiazek &
S. T. Nichol
Sample details
Collection date
2004
Collection date (lower bound)
2004-01-01
Collection date (upper bound)
2004-12-31
Earliest release date
2017-09-06
Collection country
Turkey
Isolate name
Tur_2004_813151_M
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-06 07:31
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Centers for Disease Control and Prevention, Viral Special Pathogens Branch
INSDC
NCBI release date
2017-09-06
INSDC accession M
MF511233.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics M
Length M
5354
Total SNPs M
1049
Total inserted nucs M
1
Total deleted nucs M
3
Total ambiguous nucs M
2
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
99.78%
Total stop codons M
0
Submission details
Submission ID
MF511233.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-06 07:31:19 UTC
Date released
2026-02-06 07:35:27 UTC
Files
Annotations
LOC_001G5F0.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
M
M:
T
40
A
M:
G
50
A
M:
A
51
G
M:
T
67
C
M:
T
68
C
M:
A
69
G
M:
T
71
A
M:
G
76
C
M:
A
80
G
M:
T
83
C
M:
G
84
A
M:
T
86
C
M:
C
92
T
M:
T
100
C
M:
T
102
C
M:
C
103
T
M:
A
108
G
M:
A
112
G
Show more
Deletions
M:321-323
Insertions
ins_M:5171:T
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
C
11
Y
GPC:
C
15
L
GPC:
G
16
C
GPC:
E
19
G
GPC:
T
20
A
GPC:
S
23
Q
GPC:
H
24
L
GPC:
E
26
T
GPC:
R
28
E
GPC:
K
31
G
GPC:
D
33
N
GPC:
T
34
N
GPC:
M
35
T
Show more
Deletions
GPC:77
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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