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LOC_001G4TA.1
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Download FASTA
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Display Name: South_Africa/LOC_001G4TA.1/1985
M. Zivcec,
L. Guerrero,
C. Albarino,
C. Spiropoulou,
P. E. Rollin,
T. G. Ksiazek,
R. Swanepoel &
S. T. Nichol
Sample details
Collection date
1985
Collection date (lower bound)
1985-01-01
Collection date (upper bound)
1985-12-31
Earliest release date
2017-09-06
Collection country
South Africa
Isolate name
SPU94_85_813055_S
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-13 18:06
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Centers for Disease Control and Prevention, Viral Special Pathogens Branch
INSDC
NCBI release date
2017-09-06
INSDC accession S
MF511221.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics S
Length S
1662
Total SNPs S
292
Total inserted nucs S
5
Total deleted nucs S
0
Total ambiguous nucs S
1
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
91.69%
Total stop codons S
0
Submission details
Submission ID
MF511221.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-13 18:06:39 UTC
Date released
2026-02-13 18:09:50 UTC
Files
Annotations
LOC_001G4TA.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
S
S:
T
16
A
S:
T
23
C
S:
C
31
G
S:
A
45
G
S:
C
48
T
S:
A
62
C
S:
A
65
G
S:
A
69
G
S:
A
83
G
S:
A
84
G
S:
A
93
G
S:
A
98
T
S:
A
102
G
S:
G
106
A
S:
A
108
C
S:
A
114
T
S:
T
128
A
S:
C
138
T
Show more
Deletions
None
Insertions
ins_S:0:CACGT
Amino acid mutations
Mutations called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
NP
NP:
N
8
T
NP:
N
9
S
NP:
K
15
R
NP:
Y
20
F
NP:
G
23
S
NP:
F
30
Y
NP:
K
45
R
NP:
D
116
G
NP:
Q
179
L
NP:
D
199
E
NP:
N
221
D
NP:
D
266
E
NP:
R
270
K
NP:
S
275
K
NP:
I
277
V
NP:
A
307
P
NP:
Y
311
F
NP:
T
320
S
Show more
Deletions
None
Insertions
None
L (unaligned)
S (unaligned)
L (aligned)
S (aligned)
Aligned amino acid sequences
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