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LOC_001G2W6.1
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Download FASTA
Download metadata TSV
Display Name: Senegal/LOC_001G2W6.1/1969
J. W. Koehler,
K. L. Delp,
B. J. Kearney,
T. A. Conrad,
R. J. Schoepp,
A. R. Garrison,
L. A. Altimura,
C. A. Rossi &
T. D. Minogue
Sample details
Collection date
1969
Collection date (lower bound)
1969-01-01
Collection date (upper bound)
1969-12-31
Earliest release date
2017-04-02
Collection country
Senegal
Isolate name
UCCR4416
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-06 07:31
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
USAMRIID, DSD
INSDC
NCBI release date
2017-04-02
INSDC accession L
KY484025.1
INSDC accession M
KY484026.1
INSDC accession S
KY484027.1
Host
Host taxon id
72855
Host name scientific
Hyalomma truncatum
Alignment and QC metrics L
Length L
12160
Total SNPs L
226
Total inserted nucs L
52
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
100.00%
Total stop codons L
0
Alignment and QC metrics M
Length M
5386
Total SNPs M
1538
Total inserted nucs M
70
Total deleted nucs M
50
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
100.00%
Total stop codons M
0
Alignment and QC metrics S
Length S
1686
Total SNPs S
316
Total inserted nucs S
17
Total deleted nucs S
3
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
100.00%
Total stop codons S
0
Submission details
Submission ID
KY484025.1.L/KY484026.1.M/KY484027.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-06 07:31:19 UTC
Date released
2026-02-06 07:35:27 UTC
Lineage
Segment S Lineage
I
Files
Annotations
LOC_001G2W6.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
T
65
C
L:
T
70
C
L:
G
93
A
L:
T
254
A
L:
G
277
C
L:
A
298
G
L:
G
304
A
L:
C
313
T
L:
T
340
C
L:
T
550
G
L:
G
553
A
L:
G
619
A
L:
C
673
T
L:
T
781
C
L:
C
904
T
L:
G
946
A
L:
G
961
A
L:
A
1003
G
Show more
M
M:
G
50
T
M:
A
51
G
M:
A
52
T
M:
G
56
T
M:
A
57
G
M:
T
58
A
M:
T
59
A
M:
G
60
A
M:
A
64
G
M:
T
65
A
M:
C
66
T
M:
A
69
G
M:
A
70
T
M:
T
71
G
M:
T
72
A
M:
C
74
G
M:
G
76
A
M:
A
80
G
Show more
S
S:
C
38
A
S:
T
39
C
S:
G
54
A
S:
A
61
G
S:
G
67
A
S:
G
73
A
S:
T
79
C
S:
A
92
C
S:
G
99
A
S:
G
100
A
S:
A
109
G
S:
A
118
G
S:
T
127
C
S:
A
130
G
S:
C
142
T
S:
C
160
T
S:
T
163
C
S:
C
166
T
Show more
Deletions
M:638-652, M:5166-5200, S:1512-1514
Insertions
ins_L:12108:TTCATCATCATCGTTATTATCTTGGGGTGTGGGGGGAACGATTTCTTTGAGA, ins_M:224:ATGTCTGTGCTG, ins_M:359:ACTTCTGTCGCTACCATCAAAACACAAGAGTCAGAA, ins_M:5241:GCTAA, ins_M:5261:GCACCTT, ins_M:5288:TAACAATCAA, ins_S:1582:TTACAGTTACCAAGAC, ins_S:1616:A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
M
1
K
GPC:
H
2
F
GPC:
I
3
M
GPC:
S
4
L
GPC:
M
6
T
GPC:
Y
7
N
GPC:
A
8
F
GPC:
I
9
F
GPC:
L
10
F
GPC:
L
12
Q
GPC:
Q
13
L
GPC:
C
15
W
GPC:
L
17
G
GPC:
D
40
V
GPC:
N
41
A
GPC:
P
42
S
GPC:
S
43
G
GPC:
S
44
G
Show more
NP
NP:
M
13
L
NP:
R
15
K
NP:
S
39
N
NP:
V
40
M
NP:
S
52
G
NP:
F
73
Y
NP:
K
91
R
NP:
A
100
T
NP:
T
124
A
NP:
G
125
N
NP:
A
154
S
NP:
H
195
K
NP:
V
198
I
NP:
D
199
E
NP:
I
220
V
NP:
I
246
V
NP:
D
248
E
NP:
N
258
K
Show more
RdRp
RdRp:
S
6
N
RdRp:
Y
60
N
RdRp:
I
505
T
RdRp:
R
764
K
RdRp:
T
767
A
RdRp:
K
809
R
RdRp:
G
812
E
RdRp:
T
876
S
RdRp:
G
1047
E
RdRp:
I
1085
V
RdRp:
K
1167
R
RdRp:
V
1228
I
RdRp:
N
1367
D
RdRp:
S
1436
N
RdRp:
T
1449
N
RdRp:
P
1660
T
RdRp:
T
1675
N
RdRp:
N
1799
S
Show more
Deletions
GPC:19-38, GPC:182-206
Insertions
ins_GPC:131:PSTTAGSGASTPSNTTSNKPDVNSLTSPILEAKSSP, ins_GPC:221:SKQTDTITLEISPKIQTTQS
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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