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LOC_001G2UA.1
Download
Download FASTA
Download metadata TSV
Display Name: South_Africa/LOC_001G2UA.1/1987
J. W. Koehler,
K. L. Delp,
B. J. Kearney,
T. A. Conrad,
R. J. Schoepp,
A. R. Garrison,
L. A. Altimura,
C. A. Rossi &
T. D. Minogue
Sample details
Collection date
1987
Collection date (lower bound)
1987-01-01
Collection date (upper bound)
1987-12-31
Earliest release date
2017-04-02
Collection country
South Africa
Isolate name
SPU 115/87
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-13 18:06
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
USAMRIID, DSD
INSDC
NCBI release date
2017-04-02
INSDC accession L
KY484041.1
INSDC accession M
KY484042.1
INSDC accession S
KY484040.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
12169
Total SNPs L
895
Total inserted nucs L
62
Total deleted nucs L
1
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
100.00%
Total stop codons L
0
Alignment and QC metrics M
Length M
5365
Total SNPs M
655
Total inserted nucs M
4
Total deleted nucs M
1
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
98.26%
Total stop codons M
0
Alignment and QC metrics S
Length S
1673
Total SNPs S
82
Total inserted nucs S
16
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
91.75%
Total stop codons S
0
Submission details
Submission ID
KY484041.1.L/KY484042.1.M/KY484040.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-13 18:06:39 UTC
Date released
2026-02-13 18:09:50 UTC
Files
Annotations
LOC_001G2UA.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L
L:
G
32
A
L:
C
37
T
L:
T
49
C
L:
T
55
C
L:
C
63
G
L:
C
64
T
L:
T
65
C
L:
T
67
G
L:
T
70
C
L:
A
74
G
L:
G
93
A
L:
C
100
T
L:
T
118
C
L:
T
154
C
L:
T
157
C
L:
T
160
C
L:
T
163
C
L:
T
202
C
Show more
M
M:
G
46
A
M:
A
60
G
M:
G
65
A
M:
T
78
C
M:
G
103
A
M:
T
115
C
M:
T
116
C
M:
C
118
T
M:
T
122
C
M:
G
124
A
M:
A
127
G
M:
C
133
T
M:
A
139
G
M:
G
142
A
M:
A
143
G
M:
A
149
C
M:
C
151
T
M:
C
155
T
Show more
S
S:
T
16
A
S:
C
31
G
S:
G
34
A
S:
C
54
T
S:
A
84
G
S:
A
98
T
S:
C
150
T
S:
G
240
A
S:
G
282
A
S:
A
309
G
S:
A
311
G
S:
G
330
A
S:
T
366
C
S:
A
381
G
S:
T
387
C
S:
A
393
G
S:
A
405
G
S:
A
423
G
Show more
Deletions
L:12066, M:5166
Insertions
ins_L:11928:TG, ins_L:12092:TCTACCATTCATTTCAGTTTCATCATCATTATTATTGTTATTATTTTAGGGTGTGGGGGG, ins_M:0:TCTC, ins_S:0:TCTCAAAGAAACACGT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
F
10
L
GPC:
K
19
E
GPC:
N
21
H
GPC:
P
23
S
GPC:
G
26
E
GPC:
E
28
G
GPC:
N
31
K
GPC:
H
33
D
GPC:
D
39
G
GPC:
S
41
N
GPC:
Q
42
L
GPC:
P
44
S
GPC:
P
46
Q
GPC:
P
53
S
GPC:
V
54
I
GPC:
S
64
T
GPC:
S
80
P
GPC:
T
83
I
Show more
NP
NP:
Y
20
F
NP:
K
91
R
RdRp
RdRp:
S
6
N
RdRp:
Y
60
N
RdRp:
R
80
K
RdRp:
T
165
K
RdRp:
A
202
T
RdRp:
N
206
Y
RdRp:
K
492
R
RdRp:
F
495
Y
RdRp:
I
505
T
RdRp:
R
764
K
RdRp:
L
765
P
RdRp:
T
767
A
RdRp:
R
770
K
RdRp:
D
771
E
RdRp:
P
774
L
RdRp:
N
779
S
RdRp:
I
783
T
RdRp:
H
786
Y
Show more
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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