This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001FMDQ.1

Viet_Nam/LOC_001FMDQ.1/2023-06-14
C. V. V. Nguyen, T. C. Tang, H. T. Nguyen, H. T. T. Nguyen, Q. T. Du, T. B. Tran, H. M. Cao, M. N. Q. Ngo, K. H. Truong, H. D. K. Do, T. H. C. Truong, N. T. H. Nguyen, T. K. Le, N. A. Lam, T. T. Cao, N. N. T. Le, Q. V. Pham, N. N. T. Phung, Q. T. Phan, H. van Doorn, L. Thwaites, T. T. Tran, D. T. Nguyen, G. Thwaites, A. T. Nguyen & T. V. Le

Oxford University Clinical Research Unit, Emerging Infections

Sample details

Collection date
2023-06-14
Earliest release date
2023-11-21
Sampling location
Viet Nam
Isolate name
VN52-2023/EV-A71/B5

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2023-11-21
NCBI update date
2023-11-21
INSDC accession

Host

Host

Submission details

Submission ID
OR766755.1
Submitting group
Date submitted
2026-09-11 12:58:58 UTC
Date released
2026-09-11 13:08:14 UTC

Clade

Clade EV-A71
B5

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
124
Total unknown nucs
47
Length
742 (9.38%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions
  • A2591G
  • A2597G
  • T2600A
  • G2603A
  • G2606A
  • G2610A
  • T2636A
  • G2639A
  • A2654G
  • T2657C
  • C2660T
  • T2666G
  • A2669G
  • T2678G
  • T2681C
  • C2702T
  • A2705G
  • T2708A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

VP1

  • VP1:A58T
  • VP1:K98E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S184T
  • VP1:E244K
  • VP1:S246P
  • VP1:I249V
  • VP1:S275A
  • VP1:D282N
Deletions
N/A
Insertions
N/A

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