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LOC_001EKLD.1
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Download FASTA
Download metadata TSV
Taiwan/LOC_001EKLD.1/2016
D. Cheng,
Y.-W. Chiu,
S.-W. Huang,
Y.-Y. Lien,
C.-L. Chang,
H.-P. Tsai,
Y.-F. Wang &
J.-R. Wang
College of Medicine, National Cheng Kung University, Department of Medical Laboratory Science and Biotechnology
Sample details
Collection date
2016
Earliest release date
2022-11-02
Sampling location
Taiwan
Isolate name
M1005TW16
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2022-11-02
NCBI update date
2022-11-02
INSDC accession
OP562232.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
OP562232.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-11 12:58:57 UTC
Date released
2026-09-11 13:07:13 UTC
Clade
Clade CV-A16
B1c
Genotype
Genotype
CV-A16
Alignment and QC
Total SNPs
585
Length
2575 (34.7%)
Nucleotide mutations
Mutations called relative to the
U05876.1
reference
Substitutions
A
759
G
A
768
C
C
771
T
A
777
G
G
780
C
T
783
G
C
786
G
C
789
T
A
792
G
G
798
A
A
804
T
A
807
G
A
810
G
A
813
G
A
816
T
T
819
A
C
828
T
C
834
A
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
U05876.1
reference
Substitutions
VP1
VP1:
G
3
P
VP1:
A
11
T
VP1:
T
13
N
VP1:
S
14
N
VP1:
R
15
Q
VP1:
G
17
N
VP1:
A
19
S
VP1:
S
22
A
VP1:
E
26
L
VP1:
N
33
E
VP1:
E
36
S
VP1:
L
43
V
VP1:
Q
59
S
VP1:
E
61
K
VP1:
T
79
A
VP1:
M
119
L
VP1:
A
139
V
VP1:
I
179
V
Show more
VP2
VP2:
I
32
V
VP2:
K
43
P
VP2:
A
45
T
VP2:
I
126
V
VP2:
D
139
T
VP2:
V
149
A
VP2:
N
162
H
VP2:
V
170
I
VP2:
I
215
L
VP2:
V
217
I
VP2:
A
226
T
VP2:
I
252
V
VP3
VP3:
A
33
P
VP3:
R
41
H
VP3:
Q
59
K
VP3:
S
60
T
VP3:
V
85
A
VP3:
N
93
D
VP3:
G
141
N
VP3:
L
147
I
VP3:
I
169
V
VP3:
K
182
R
VP3:
D
183
A
VP3:
T
193
I
VP3:
S
238
T
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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