This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001EJFR.1

Display Name: China/LOC_001EJFR.1/2022
Q. Xu

Sample details

Collection date
2022
Collection date (lower bound)
2022-01-01
Collection date (upper bound)
2022-12-31
Earliest release date
2025-10-12
Collection country
China
Isolate name
2022CV16-HZ-67

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-16 21:19insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Hangzhou Center for Disease Control and Prevention (Hangzhou Health Supervision Institution), Zhejiang Key Laboratory of Multi-Omics in Infection and Immunity

INSDC

NCBI release date
2025-10-12
NCBI update date
2025-10-12
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
7333
Total SNPs
1571
Total inserted nucs
1
Total deleted nucs
5
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
98.97%
Total stop codons
0

Submission details

Submission ID
PX448981.1
Submitting group
Date submitted
2026-01-16 21:19:44 UTC
Date released
2026-01-16 21:35:23 UTC

Genotype

Genotype
CV-A16

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T69C
  • C71T
  • G89A
  • T90A
  • T103G
  • A119T
  • C123T
  • C126A
  • T127A
  • C128T
  • T130A
  • C132G
  • G137A
  • T138A
  • C142T
  • A143G
  • A154G
  • T162C
    • Deletions
    100, 134, 702-704
    Insertions
    ins_7341:T

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions

    2A

  • 2A:D57N
  • 2A:R68K
  • 2A:S77T

    • 2B

  • 2B:T15M
  • 2B:H31Y
  • 2B:I47V
  • 2B:L49I
  • 2B:I57V
  • 2B:A96V

    • 2C

  • 2C:N23S
  • 2C:T96V
  • 2C:I228V
  • 2C:G264S
  • 2C:R268K
  • 2C:S271T
  • 2C:V303I
  • 2C:Y318S

    • 3A

  • 3A:P3L
  • 3A:R6K
  • 3A:D39E
  • 3A:T49A
  • 3A:I61V
  • 3A:A66T

    • 3B

  • 3B:T10A
  • 3B:I15V

    • 3C

  • 3C:V36I
  • 3C:I56V
  • 3C:N93T
  • 3C:S95T
  • 3C:A96G
  • 3C:V103I
  • 3C:V154I
  • 3C:V157I
  • 3C:S177G

    • 3D

  • 3D:I17V
  • 3D:D32G
  • 3D:N37S
  • 3D:H44T
  • 3D:R46K
  • 3D:I74V
  • 3D:K75T
  • 3D:E76Q
  • 3D:S93N
  • 3D:Q94K
  • 3D:N106F
  • 3D:L112F
  • 3D:T134V
  • 3D:V138T
  • 3D:S139T
  • 3D:L152M
  • 3D:I165L
  • 3D:A190T

    • VP1

  • VP1:G3P
  • VP1:A11T
  • VP1:T13N
  • VP1:S14N
  • VP1:R15Q
  • VP1:G17N
  • VP1:A19S
  • VP1:S22A
  • VP1:E26L
  • VP1:N33E
  • VP1:E36S
  • VP1:L43V
  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
  • VP1:T164K

    • VP2

  • VP2:I32V
  • VP2:K43P
  • VP2:A45T
  • VP2:I126V
  • VP2:D139T
  • VP2:V149A
  • VP2:N162H
  • VP2:V170I
  • VP2:I215L
  • VP2:V217I
  • VP2:A226T
  • VP2:I252V

    • VP3

  • VP3:A33P
  • VP3:Q59K
  • VP3:S60T
  • VP3:V85A
  • VP3:N93D
  • VP3:G141N
  • VP3:L147I
  • VP3:I169V
  • VP3:K182R
  • VP3:D183A
  • VP3:T193I
  • VP3:S238T
    • Deletions
    None
    Insertions
    None

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